Biochemistry & Molecular Biology

Research output

Research output per year 1967 2013 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 99244 Citations
• 147 h-index
• 1767 Article
• 104 Review article
• 37 Comment/debate
• 30 Chapter
• 61 More
  • 21 Letter
  • 14 Conference contribution
  • 11 Short survey
  • 7 Chapter (peer-reviewed)
  • 4 Editorial
  • 2 Paper
  • 1 Scholarly edition
  • 1 Other contribution

Research output per year

Research output per year

Search results

• 2023

  Analysis of Golgi Secretory Functions in Cancer

  Banerjee, P., Tan, X., Russell, W. K. & Kurie, J. M., 2023, Methods in Molecular Biology. Humana Press Inc., p. 785-810 26 p. (Methods in Molecular Biology; vol. 2557).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Paracrine Communication 100%
  • Secretory Pathway 82%
  • Golgi Apparatus 80%
  • Neoplasms 68%
  • Proteomics 65%

• NMR Methods for Characterization of Glycosaminoglycan–Chemokine Interactions

  Pomin, V. H. & Rajarathnam, K., 2023, Methods in Molecular Biology. Humana Press Inc., p. 143-157 15 p. (Methods in Molecular Biology; vol. 2597).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Chemokines 100%
  • Magnetic Resonance Spectroscopy 89%
  • Glycosaminoglycans 68%
  • Relaxation Therapy 28%
  • Leukocytes 16%
• 2022

  Characterizing Thermodynamics of Protein-Glycosaminoglycan Interactions Using Isothermal Titration Calorimetry

  Dutta, A. K., Sepuru, K. M., Rösgen, J. & Rajarathnam, K., 2022, Methods in Molecular Biology. Humana Press Inc., p. 307-317 11 p. (Methods in Molecular Biology; vol. 2303).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Calorimetry 100%
  • Thermodynamics 88%
  • Glycosaminoglycans 77%
  • Entropy 29%
  • Proteins 26%

• Solution NMR Spectroscopy for Characterizing Protein–Glycosaminoglycan Interactions

  Joseph, P. R. B., Sepuru, K. M., Poluri, K. M. & Rajarathnam, K., 2022, Methods in Molecular Biology. Humana Press Inc., p. 13-23 11 p. (Methods in Molecular Biology; vol. 2303).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Magnetic Resonance Spectroscopy 100%
  • Data Accuracy 41%
  • Osmolar Concentration 41%
  • Buffers 36%
  • Proteins 14%
  1 Scopus citations
• 2021

  Flavivirus enzymes and their inhibitors

  Knyazhanskaya, E., Morais, M. C. & Choi, K. H., Jan 2021, Viral Replication Enzymes and their Inhibitors Part A. Cameron, C. E., Arnold, J. J. & Kaguni, L. S. (eds.). Academic Press, p. 265-303 39 p. (Enzymes; vol. 49).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Flavivirus 100%
  • Flavivirus Infections 94%
  • Enzyme Inhibitors 89%
  • Protein 32%
  • Viral Hemorrhagic Fevers 30%
  6 Scopus citations
• 2020

  Tail Structure and Dynamics

  Bhatt, S., Leiman, P. G. & Taylor, N. M. I., Jan 1 2020, Encyclopedia of Virology: Volume 1-5, Fourth Edition. Elsevier, Vol. 1-5. p. 186-193 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bacteriophages 100%
  • Cell Membrane 73%
  • Bacterial Proteins 61%
  • Peptidoglycan 60%
  • Capsid 58%
  1 Scopus citations

• Ustilago maydis Viruses and Their Killer Toxins

  Williams, A. & Smith, T. J., Jan 1 2020, Encyclopedia of Virology: Volume 1-5, Fourth Edition. Elsevier, Vol. 1-5. p. 513-519 7 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Ustilago 100%
  • Totiviridae 59%
  • Viruses 40%
  • Calcium Channels 32%
  • Saccharomyces cerevisiae 27%
• 2019

  Endotoxin-induced uveitis in rodents

  Yadav, U. C. S. & Ramana, K., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 161-168 8 p. (Methods in Molecular Biology; vol. 1960).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Uveitis 100%
  • Endotoxins 88%
  • Rodentia 73%
  • Inflammation 19%
  • Exudates and Transudates 12%
  15 Scopus citations

• NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics

  Nguyen, D., Chen, C., Pettitt, B. M. & Iwahara, J., Jan 1 2019, Biological NMR Part B. Wand, A. J. (ed.). Academic Press Inc., p. 285-332 48 p. (Methods in Enzymology; vol. 615).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Hydrogen Bonding 100%
  • Static Electricity 97%
  • Hydrogen Bond 50%
  • Lysine 48%
  • Molecular Dynamics Simulation 37%
  11 Scopus citations
• 2018

  ClickSeq: Replacing fragmentation and enzymatic ligation with click-chemistry to prevent sequence chimeras

  Jaworski, E. & Routh, A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1712. p. 71-85 15 p. (Methods in Molecular Biology; vol. 1712).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Click Chemistry 100%
  • Viral RNA 67%
  • Biological Phenomena 60%
  • Genetic Recombination 59%
  • High-Throughput Nucleotide Sequencing 59%
  14 Scopus citations

• Discovery of potent non-nucleoside inhibitors of dengue viral RNA-dependent rna polymerase from fragment screening and structure-guided design

  Lim, S. P., Noble, C. G., Nilar, S., Shi, P. Y. & Yokokawa, F., 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 187-198 12 p. (Advances in Experimental Medicine and Biology; vol. 1062).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • RNA Directed RNA Polymerase Inhibitor 100%
  • RNA Replicase 67%
  • Addition Compound 62%
  • Drug Target 57%
  • Dengue 57%
  14 Scopus citations

• Flaviviral RNA structures and their role in replication and immunity

  Bidet, K. & Garcia-Blanco, M., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 45-62 18 p. (Advances in Experimental Medicine and Biology; vol. 1062).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • RNA Structure 100%
  • Viral RNA 80%
  • Immunity 60%
  • RNA 51%
  • Virulence 43%
  7 Scopus citations

• Roles of pro-viral host factors in mosquito-borne flavivirus infections

  Campos, R. K., Garcia-Blanco, M. A. & Bradrick, S. S., 2018, Current Topics in Microbiology and Immunology. Springer Verlag, p. 43-67 25 p. (Current Topics in Microbiology and Immunology; vol. 419).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Flavivirus Infections 100%
  • Flavivirus 79%
  • Life Cycle Stages 66%
  • Culicidae 66%
  • Cell Biology 53%
  8 Scopus citations
• 2017

  Genome-wide rnai screens for RNA processing events in drosophila melanogaster s2 cells

  Peart, N. & Wagner, E., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1648. p. 235-245 11 p. (Methods in Molecular Biology; vol. 1648).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Drosophila melanogaster 100%
  • RNA 63%
  • Genome 62%
  • Religious Philosophies 39%
  • Developmental Genes 31%

• Reverse genetics of Zika virus

  Shan, C., Xie, X. & Shi, P-Y., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1602. p. 47-58 12 p. (Methods in Molecular Biology; vol. 1602).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Reverse Genetics 100%
  • Zika Virus 99%
  • Complementary DNA 61%
  • Clone Cells 60%
  • Hepatitis Delta Virus 35%
  8 Scopus citations
• 2016

  Osmophobics and hydrophobics: The changing landscape of protein folding

  Auton, M. & Pettitt, B., Apr 19 2016, Fluctuation Theory of Solutions: Applications in Chemistry, Chemical Engineering, and Biophysics. CRC Press, p. 309-323 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Fluorescence Spectrometry 100%
  • Thermodynamics 94%
  • Protein Stability 92%
  • Protein Folding 91%
  • folding 79%
• 2014

  Functional proteomics for the characterization of impaired cellular responses to glucocorticoids in asthma

  Pazdrak, K. & Kurosky, A., 2014, Heterogeneity in Asthma. Springer New York LLC, p. 255-270 16 p. (Advances in Experimental Medicine and Biology; vol. 795).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Glucocorticoid 100%
  • Proteomics 71%
  • Glucocorticoids 70%
  • Glucocorticoid Receptors 61%
  • Asthma 60%
  3 Scopus citations

• The interface between dengue virus and the human host

  Barrows, N. J., Bradrick, S. S., Bidet, K., Anwar, A., Ward, A. M., Jamison, S. F., Levitt, B., Le Sommer, C. & Garcia-Blanco, M. A., Aug 29 2014, Dengue and Dengue Hemorrhagic Fever: Second Edition. CABI International, p. 406-424 19 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  1 Scopus citations
• 2013

  Endotoxin-induced uveitis in rodents

  Yadav, U. C. S. & Ramana, K. V., 2013, Mouse Models of Innate Immunity: Methods and Protocols. Allen, I. C. (ed.). p. 155-162 8 p. (Methods in Molecular Biology; vol. 1031).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Uveitis 100%
  • Endotoxins 88%
  • Rodentia 73%
  • Inflammation 14%
  • Exudates and Transudates 13%
  17 Scopus citations

• NMR studies on the dynamics of hydrogen bonds and ion pairs involving lysine side chains of proteins

  Zandarashvili, L., Esadze, A. & Iwahara, J., 2013, Biomolecular Spectroscopy: Advances from Integrating Experiments and Theory. Academic Press Inc., p. 37-80 44 p. (Advances in Protein Chemistry and Structural Biology; vol. 93).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Hydrogen Bonding 100%
  • Protons 84%
  • Lysine 81%
  • Ion Pair 74%
  • Hydrogen Bond 50%
  26 Scopus citations

• Single-molecule methods

  Bujalowski, P., Sherman, M. & Oberhauser, A., Jan 1 2013, Molecular Biophysics for the Life Sciences. Springer New York, p. 257-288 32 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Optical Tweezers 100%
  • Cryoelectron Microscopy 89%
  • Cryo-Electron Microscopy 86%
  • Biological Science Disciplines 82%
  • Atomic Force Microscopy 79%
  2 Scopus citations
• 2012

  The advantage of global fitting of data involving complex linked reactions

  Herman, P. & Lee, J. C., Jan 1 2012, Allostery: Methods and Protocols. Fenton, A. W. (ed.). p. 399-421 23 p. (Methods in Molecular Biology; vol. 796).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Calorimetry 100%
  • Pyruvate Kinase 94%
  • Least-Squares Analysis 81%
  • Research Design 57%
  • Kinetics 52%
  12 Scopus citations

• The dsDNA packaging motor in bacteriophage ø29

  Morais, M. C., Mar 19 2012, Viral Molecular Machines. Rossmann, M. & Rao, V. (eds.). p. 511-547 37 p. (Advances in Experimental Medicine and Biology; vol. 726).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Product Packaging 100%
  • Bacteriophages 85%
  • DNA Packaging 51%
  • Protein 35%
  • Adenosine Triphosphatases 34%
  31 Scopus citations
• 2010

  Measurement and Identification of S-Glutathiolated Proteins

  Hill, B. G., Ramana, K. V., Cai, J., Bhatnagar, A. & Srivastava, S. K., Jan 2010, Methods in Enzymology. Academic Press Inc., p. 179-197 19 p. (Methods in Enzymology; vol. 473).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Protein 100%
  • Proteins 89%
  • Modification 44%
  • Nitrosative Stress 41%
  • Adduct 38%
  36 Scopus citations

• Population status and conservation of the ganges river dolphin (platanista gangetica gangetica) in the indian subcontinent

  Sinha, R. K., Verma, S. K. & Singh, L., Dec 1 2010, Biology, Evolution and Conservation of River Dolphins within South America and Asia. Nova Science Publishers, Inc., p. 419-444 26 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Platanista gangetica 100%
  • Dolphins 76%
  • dolphins 41%
  • Ganges River 30%
  • Rivers 25%
  8 Scopus citations

• Synthesis, Quantification, Characterization, and Signaling Properties of Glutathionyl Conjugates of Enals

  Srivastava, S., Ramana, K. V., Bhatnagar, A. & Srivastava, S. K., Jan 2010, Methods in Enzymology. Academic Press Inc., p. 297-313 17 p. (Methods in Enzymology; vol. 474).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • 2-nonenal 100%
  • 4-hydroxy-2-nonenal 78%
  • Pharmacological Metabolism 45%
  • Glutathione Conjugate 42%
  • Lipid 40%
  14 Scopus citations
• 2009

  Chapter 20 Effects of Hepatitis C Core Protein on Mitochondrial Electron Transport and Production of Reactive Oxygen Species

  Campbell, R. V., Yang, Y., Wang, T., Rachamallu, A., Li, Y., Watowich, S. J. & Weinman, S. A., 2009, ] Mitochondrial Function, Part A: Mitochondrial Electron Transport Complexes and Reactive Oxygen Species. Allison, W. & Scheffler, I. (eds.). A ed. p. 363-380 18 p. (Methods in Enzymology; vol. 456, no. A).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Core Protein 100%
  • Mitochondrial Proteins 87%
  • Electron Transport 84%
  • Hepatitis C 78%
  • Reactive Oxygen Metabolite 72%
  10 Scopus citations
• 2003

  Mechanisms of Stress Response Signaling and Recovery in the Liver of Young versus Aged Mice: The p38 MAPK and SOCS Families of Regulatory Proteins

  Papaconstantinou, J., Jan 1 2003, Handbook of Cell Signaling: Volume 1-3. Elsevier, Vol. 1-3. p. 515-529 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Preface

  Watson, C., 2003, The Identities of Membrane Steroid Receptors: …and other proteins mediating nongenomic steroid action. Watson, C. S. (ed.). Boston: Kluwer Academic Publishers, p. xi-xiii

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• 1999

  ³¹ P NMR

  Gorenstein, D. G. & Luxon, B. A., 1999, Encyclopedia of Spectroscopy and Spectrometry. Elsevier Ltd, p. 2204-2212 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Phosphorus-31 Magnetic Resonance Spectroscopy 100%
  • Magnetic Resonance Spectroscopy 85%
  • Spin-Spin Coupling Constant 66%
  • Molecular Dynamics Simulation 56%
  • Oligonucleotides 52%
  3 Scopus citations