Biochemistry & Molecular Biology

Research Output

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Conference contribution
2019

Transmembrane scf nanodiscs enhance revascularization in ischemia and induce cd34-/cd133+ endothelial progenitor cells

Takematsu, E., Auster, J., Singh, A., Chen, P. C., Canga, S., Degroot, A., Sherman, M., Stachowiak, J., Dunn, A. K. & Baker, A. B., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

Controlling microarray DNA hybridization efficiency by probe-surface distance and external surface electrostatics

Qamhieh, K. & Pettitt, B., Mar 30 2015, 4th International Congress in Advances in Applied Physics and Materials Science, APMAS 2014. American Institute of Physics Inc., Vol. 1653. 020090

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Proteomics Approach to Identify Biomarkers in Neurodegenerative Diseases

Nayak, A., Salt, G., Verma, S. K. & Kishore, U., Jan 1 2015, International Review of Neurobiology. Hurley, M. J. (ed.). Academic Press Inc., p. 59-86 28 p. (International Review of Neurobiology; vol. 121).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
2014

Robust Weighted Kernel Logistic Regression to predict gene-gene regulatory association

Maalouf, M., Humouz, D. & Kudlicki, A., Jan 1 2014, IIE Annual Conference and Expo 2014. Institute of Industrial Engineers, p. 1356-1360 5 p. (IIE Annual Conference and Expo 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2013

Visual analysis and dynamical control of phosphoproteomic networks

Meyer-Bäse, A., Görke, R., Lobbes, M., Emmett, M. R. & Nilsson, C. L., Aug 9 2013, Independent Component Analyses, Compressive Sampling, Wavelets, Neural Net, Biosystems, and Nanoengineering XI. 87500X. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8750).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

Protein-protein binding affinity prediction based on an SVR ensemble

Li, X., Zhu, M., Li, X., Wang, H. Q. & Wang, S., Aug 28 2012, Intelligent Computing Technology - 8th International Conference, ICIC 2012, Proceedings. p. 145-151 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7389 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Protein-protein interaction affinity prediction based on interface descriptors and machine learning

Li, X. L., Zhu, M., Li, X. L., Wang, H. Q. & Wang, S., Aug 20 2012, Intelligent Computing Theories and Applications - 8th International Conference, ICIC 2012, Proceedings. p. 205-212 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7390 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2011

PharmaSat: Drug dose response in microgravity from a free-flying integrated biofluidic/optical culture-and-analysis satellite

Ricco, A. J., Parra, M., Niesel, D., Piccini, M., Ly, D., McGinnis, M., Kudlicki, A., Hines, J. W., Timucin, L., Beasley, C., Ricks, R., McIntyre, M., Friedericks, C., Henschke, M., Leung, R., Diaz-Aguado, M., Kitts, C., Mas, I., Rasay, M., Agasid, E. & 4 others, Luzzi, E., Ronzano, K., Squires, D. & Yost, B., 2011, Microfluidics, BioMEMS, and Medical Microsystems IX. 79290T. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7929).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations
2010

A comparative study on feature selection in regression for predicting the affinity of TAP binding peptides

Li, X. L. & Wang, S. L., Sep 6 2010, Advanced Intelligent Computing Theories and Applications: With Aspects of Artificial Intelligence - 6th International Conference on Intelligent Computing, ICIC 2010, Proceedings. Huang, D-S. & Zhang, X. (eds.). p. 69-75 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6216 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

A residual level potential of mean force based approach to predict protein-protein interaction affinity

Li, X. L., Hou, M. L. & Wang, S. L., Oct 29 2010, Advanced Intelligent Computing Theories and Applications - 6th International Conference on Intelligent Computing, ICIC 2010, Proceedings. p. 680-686 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6215 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Performance comparison of tumor classification based on linear and non-linear dimensionality reduction methods

Wang, S. L., You, H. Z., Lei, Y. K. & Li, X. L., Oct 29 2010, Advanced Intelligent Computing Theories and Applications - 6th International Conference on Intelligent Computing, ICIC 2010, Proceedings. p. 291-300 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6215 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations
2009

Inferring protein interactions from sequence using support vector machine

Shi, M. G., Wu, M., Huang, D. S. & Li, X. L., 2009, 2009 International Joint Conference on Neural Networks, IJCNN 2009. p. 2903-2907 5 p. 5178660. (Proceedings of the International Joint Conference on Neural Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2008

Neighborhood rough set model based gene selection for multi-subtype tumor classification

Wang, S., Li, X. & Zhang, S., Nov 27 2008, Advanced Intelligent Computing Theories and Applications: With Aspects of Theoretical and Methodological Issues - 4th International Conference on Intelligent Computing, ICIC 2008, Proceedings. p. 146-158 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5226 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Significance-testing of periodogram for short time series

Kudlicki, A., Rowicka, M. & Otwinowski, Z., Dec 1 2008, Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008. p. 424-430 7 p. (Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations