University of Texas Medical Branch

  • Galveston

    United States

Research Output

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Conference contribution
2012

Modeling fluid structure-interactions for biomechanical analysis of the human eye

Furlani, E. P., Nunez, A. & Vizzeri, G., Aug 17 2012, Nanotechnology 2012: Electronics, Devices, Fabrication, MEMS, Fluidics and Computational - 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012. p. 337-340 4 p. (Technical Proceedings of the 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

NF-kB activation as a biomarker of light injury using a transgenic mouse model

Pocock, G. M., Boretsky, A., Wang, H. C., Golden, D., Gupta, P., Vargas, G., Oliver, J. W. & Motamedi, M., Apr 2 2012, Optical Interactions with Tissue and Cells XXIII. 822108. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8221).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Noninvasive, optoacoustic monitoring of cerebral venous blood oxygenation in newborns

Petrov, I. Y., Wynne, K. E., Petrov, Y., Esenaliev, R. O., Richardson, C. J. & Prough, D. S., Apr 9 2012, Photons Plus Ultrasound: Imaging and Sensing 2012. 82231M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8223).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Noninvasive optoacoustic system for rapid diagnostics and management of circulatory shock

Esenaliev, R. O., Petrov, I. Y., Petrov, Y., Kinsky, M. & Prough, D. S., Apr 9 2012, Photons Plus Ultrasound: Imaging and Sensing 2012. 82230F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8223).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Novel optoacoustic system for noninvasive, continuous monitoring of cerebral venous blood oxygenation

Petrov, Y., Petrov, I. Y., Prough, D. S. & Esenaliev, R. O., Apr 9 2012, Photons Plus Ultrasound: Imaging and Sensing 2012. 82231L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8223).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Protein-protein binding affinity prediction based on an SVR ensemble

Li, X., Zhu, M., Li, X., Wang, H. Q. & Wang, S., Aug 28 2012, Intelligent Computing Technology - 8th International Conference, ICIC 2012, Proceedings. p. 145-151 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7389 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Protein-protein interaction affinity prediction based on interface descriptors and machine learning

Li, X. L., Zhu, M., Li, X. L., Wang, H. Q. & Wang, S., Aug 20 2012, Intelligent Computing Theories and Applications - 8th International Conference, ICIC 2012, Proceedings. p. 205-212 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7390 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Retinal OCT image enhancement via wavelet denoising

Chitchian, S., Mayer, M. A., Boretsky, A. R., Van-Kuijk, F. J. & Motamedi, M., Dec 1 2012, Biomedical Optics, BIOMED 2012. p. BTu3A.73 (Biomedical Optics, BIOMED 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Second-degree correlation surface features from Optimal Trade-off Synthetic Discriminant Function filters for subject identification using radio frequency cardiosynchronous waveforms

Bhagavatula, M., Savvides, M., Bhagavatula, V., Friedman, R., Blue, R. & Griofa, M. O., Dec 1 2012, 2012 IEEE International Conference on Image Processing, ICIP 2012 - Proceedings. p. 269-272 4 p. 6466847. (Proceedings - International Conference on Image Processing, ICIP).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Specimen specific, 3D modeling of the elbow - Prediction of strain in the medial collateral ligament

Buford, W. L., Snijders, J. W., Patel, V. V., Curry, C. M. & Smith, B. A., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 3348-3351 4 p. 6346682. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2013

Cerebral hemodynamic changes after wartime traumatic brain injury

Razumovsky, A., Tigno, T., Hochheimer, S. M., Stephens, F. L., Bell, R., Vo, A. H., Severson, M. A., Marshall, S. A., Oppenheimer, S. M., Ecker, R. & Armonda, R. A., 2013, Cerebral Vasospasm: Neurovascular Events After Subarachnoid Hemorrhage. Springer-Verlag Wien, p. 87-90 4 p. (Acta Neurochirurgica, Supplementum; vol. 115).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations

Cerebral venous blood oxygenation monitoring during hyperventilation in healthy volunteers with a novel optoacoustic system

Petrov, A., Prough, D. S., Petrov, I. Y., Petrov, Y., Deyo, D. J., Henkel, S. N., Seeton, R. & Esenaliev, R. O., May 28 2013, Photons Plus Ultrasound: Imaging and Sensing 2013. 85814Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8581).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Combination of widefield fluorescence imaging and nonlinear optical microscopy of oral epithelial neoplasia

Pal, R., Edward, K., Brown, T., Ma, L., Yang, J., McCammon, S., Motamedi, M. & Vargas, G., May 22 2013, Advanced Biomedical and Clinical Diagnostic Systems XI. 85720M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8572).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Comparison of ocular outcomes across two 14-day bed rest platforms

Cromwell, R. L., Zanello, S. B., Yarbough, P. O., Taibbi, G. & Vizzeri, G., Dec 1 2013, Proceedings of Life in Space for Life on Earth. (European Space Agency, (Special Publication) ESA SP; vol. 706 SP).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Efficient SDS simulations on multi-GPU nodes of XSEDE high-end clusters

Schlachter, S., Herbein, S., Taufer, M., Ou, S., Patel, S. & Logan, J. S., Jan 1 2013, Proceedings - IEEE 9th International Conference on e-Science, e-Science 2013. IEEE Computer Society, p. 116-123 8 p. 6683898. (Proceedings - IEEE 9th International Conference on e-Science, e-Science 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Multiscale biomechanical modeling of the human eye

Karampelas, I. H., Furlani, E. P., Nunez, A. & Vizzeri, G., Aug 9 2013, Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. p. 354-357 4 p. (Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Noninvasive optoacoustic system for rapid diagnosis and management of circulatory shock

Petrov, I. Y., Kinsky, M., Petrov, Y., Petrov, A., Henkel, S. N., Seeton, R., Esenaliev, R. O. & Prough, D. S., May 28 2013, Photons Plus Ultrasound: Imaging and Sensing 2013. 85814Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8581).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Nonlinear optical microscopy and microspectroscopy of oral precancers and early cancer

Vargas, G. & Edward, K., Jun 12 2013, Multiphoton Microscopy in the Biomedical Sciences XIII. 85881U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8588).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Visual analysis and dynamical control of phosphoproteomic networks

Meyer-Bäse, A., Görke, R., Lobbes, M., Emmett, M. R. & Nilsson, C. L., Aug 9 2013, Independent Component Analyses, Compressive Sampling, Wavelets, Neural Net, Biosystems, and Nanoengineering XI. 87500X. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8750).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Advances in vaccines, diagnostics and pathobiology

McBride, J. W., 2014, Ehrlichia.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automated retinal layer segmentation and characterization

Luisi, J., Briley, D., Boretsky, A. & Motamedi, M., Jan 1 2014, Translational Biophotonics. SPIE, 91551N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9155).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamics of arterial pressure components in a sheep model of hemorrhage

Scully, C. G., Kramer, G. & Strauss, D. G., 2014, Computing in Cardiology. January ed. IEEE Computer Society, Vol. 41. p. 305-308 4 p. 7043040

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optoacoustic detection and monitoring of blast-induced intracranial hematomas in rats

Petrov, A., Wynne, K. E., Prough, D. S., Dewitt, D. S., Petrov, Y., Petrov, I. Y., Parsley, M. A. & Esenaliev, R. O., Jan 1 2014, Photons Plus Ultrasound: Imaging and Sensing 2014. SPIE, 894350. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8943).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Optoacoustic measurement of central venous oxygenation for assessment of circulatory shock: Clinical study in cardiac surgery patients

Petrov, I. Y., Prough, D. S., Kinsky, M., Petrov, Y., Petrov, A., Henkel, S. N., Seeton, R., Salter, M. G. & Esenaliev, R. O., Jan 1 2014, Photons Plus Ultrasound: Imaging and Sensing 2014. SPIE, 89430Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8943).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Optoacoustic monitoring of central and peripheral venous oxygenation during simulated hemorrhage

Petrov, A., Kinsky, M., Prough, D. S., Petrov, Y., Petrov, I. Y., Henkel, S. N., Seeton, R., Salter, M. G., Khan, M. N. & Esenaliev, R. O., Jan 1 2014, Photons Plus Ultrasound: Imaging and Sensing 2014. SPIE, 894336. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8943).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Robust Weighted Kernel Logistic Regression to predict gene-gene regulatory association

Maalouf, M., Humouz, D. & Kudlicki, A., Jan 1 2014, IIE Annual Conference and Expo 2014. Institute of Industrial Engineers, p. 1356-1360 5 p. (IIE Annual Conference and Expo 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Spatial location tracking using optical coherence tomography-proof of concept for gynecology

Acharya, M., Vincent, K., Motamedi, M. & Gowda, A., Oct 14 2014, Frontiers in Optics, FiO 2014. Optical Society of America (OSA), (Frontiers in Optics, FiO 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The mixing rate of the arterial blood pressure waveform Markov chain is correlated with shock index during hemorrhage in anesthetized swine

Adibuzzaman, M., Kramer, G., Galeotti, L., Merrill, S. J., Strauss, D. G. & Scully, C. G., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 3268-3271 4 p. 6944320

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Wound healing response to lunar dust exposure in the Rat cornea

Glass, A., Theriot, C., Lam, C. W., James, J. & Zanello, S., 2014, Proceedings of the International Astronautical Congress, IAC. International Astronautical Federation, IAF, Vol. 1. p. 299-305 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2015

CoCo: An application to store High-Throughput Sequencing data in compact text and binary file formats

Khanipov, K., Golovko, G., Rojas, M., Albayrak, L., Dobretsberger, O., Pimenova, M., Olson, N., Chumakov, S. & Fofanov, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1117-1122 6 p. 7359838

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Controlling microarray DNA hybridization efficiency by probe-surface distance and external surface electrostatics

Qamhieh, K. & Pettitt, B., Mar 30 2015, 4th International Congress in Advances in Applied Physics and Materials Science, APMAS 2014. American Institute of Physics Inc., Vol. 1653. 020090

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Noninvasive, optoacoustic detection and characterization of intra- and extracranial hematomas and cerebral hypoxia

Petrov, A., Prough, D., Petrov, Y., Petrov, I. Y., Robertson, C. S., Asokan, V., Agbor, A. & Esenaliev, R., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9323. 93233N

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Proteomics Approach to Identify Biomarkers in Neurodegenerative Diseases

Nayak, A., Salt, G., Verma, S. K. & Kishore, U., Jan 1 2015, International Review of Neurobiology. Hurley, M. J. (ed.). Academic Press Inc., p. 59-86 28 p. (International Review of Neurobiology; vol. 121).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
2016

A robust detection algorithm to identify breathing peaks in respiration signals from spontaneously breathing subjects

Daluwatte, C., Scully, C. G., Kramer, G. & Strauss, D. G., Feb 16 2016, Computing in Cardiology. IEEE Computer Society, Vol. 42. p. 297-300 4 p. 7408645

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

G protein-coupled receptors in drug discovery: GTC’s Modern Drug Discovery & Development Summit.

Allen, J., Oct 10 2016, Cortellis. Thomson Reuters

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Inference of predictive phospho-regulatory networks from LC-MS/MS phosphoproteomics data

Vlaic, S., Altwasser, R., Kupfer, P., Nilsson, C. L., Emmett, M., Meyer-Baese, A. & Guthke, R., 2016, BIOINFORMATICS 2016 - 7th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016. SciTePress, p. 85-91 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

In vivo cryoablation of prostate tissue with temperature monitoring by optoacoustic imaging

Petrova, E. V., Motamedi, M., Oraevskya, A. A. & Ermilov, S. A., 2016, Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE, Vol. 9708. 97080G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Optoacoustic measurements of human placenta and umbilical blood oxygenation

Nanovskaya, T., Petrov, I. Y., Petrov, Y., Patrikeeva, S. L., Ahmed, M., Hankins, G., Prough, D. & Esenaliev, R., 2016, Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE, Vol. 9708. 97080N

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Transmission (forward) mode, transcranial, noninvasive optoacoustic measurements for brain monitoring, imaging, and sensing

Petrov, I. Y., Petrov, Y., Prough, D., Richardson, C., Fonseca, R., Robertson, C. S., Asokan, C. V., Agbor, A. & Esenaliev, R., 2016, Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE, Vol. 9708. 97084P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations
2017

Cerebral blood oxygenation measurements in neonates with optoacoustic technique

Herrmann, S., Petrov, I. Y., Petrov, Y., Richardson, C., Fonseca, R., Prough, D. & Esenaliev, R., 2017, Photons Plus Ultrasound: Imaging and Sensing 2017. SPIE, Vol. 10064. 100640Q

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Designing for maximum adaptability before, during and after spaceflight

McCormack, C., Bannova, O., Bishop, S. & Camba, J. D., Jan 1 2017, 68th International Astronautical Congress, IAC 2017: Unlocking Imagination, Fostering Innovation and Strengthening Security. International Astronautical Federation, IAF, p. 12224-12230 7 p. (Proceedings of the International Astronautical Congress, IAC; vol. 18).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Exploration of natural alignment scoring rules and clustering thresholds for bacterial core/pan genome analysis

Albayrak, L., Khanipov, K., Rojas, M., Golovko, G., Pimenova, M., Fofanov, Y. & Kosoy, M., Jul 1 2017, Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Institute of Electrical and Electronics Engineers Inc., p. 249-254 6 p. (Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Novel computational approach for identification of highly mutated integrated HIV genomes

Khanipov, K., Albayrak, L., Golovko, G., Pimenova, M., Ioannis, P., Fofanov, Y., Khanipov, K. & Pavlidis, I., Jul 1 2017, Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Institute of Electrical and Electronics Engineers Inc., p. 246-248 3 p. (Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optoacoustic mapping of cerebral blood oxygenation in humans

Petrov, Y., Prough, D., Petrov, I. Y., Richardson, C., Fonseca, R., Robertson, C. S. & Esenaliev, R., 2017, Photons Plus Ultrasound: Imaging and Sensing 2017. SPIE, Vol. 10064. 100640A

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Simulator for simulating and monitoring the hypotensive patients blood pressure response of phenylephrine bolus injection and infusion with open-loop and closedloop treatment

Cao, G., Luspay, T., Ebrahimi, B., Grigoriadis, K., Franchek, M., Marques, N., Wolf, J. & Kramer, G., Jan 20 2017, Proceedings of the 8th International Conference on Computer Modeling and Simulation, ICCMS 2017. Association for Computing Machinery, Vol. Part F128047. p. 175-181 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Simultaneous measurements of total hemoglobin concentration and blood oxygenation with laser diode-based optoacoustic system

Petrov, I. Y., Prough, D., Petrov, Y., Henkel, S. N., Seeton, R. & Esenaliev, R., 2017, Photons Plus Ultrasound: Imaging and Sensing 2017. SPIE, Vol. 10064. 100640P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Split hole resonator: A nanoscale UV light source

Melentiev, P. N., Afanasiev, A. E., Kuzin, A. A., Esenaliev, R. & Balykin, V. I., Jan 1 2017, European Quantum Electronics Conference, EQEC 2017. OSA - The Optical Society, Vol. Part F81-EQEC 2017.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

An Energy-efficient Wirelessly Powered Millimeter-scale Neurostimulator with Optimized Inductive Loop Antenna and Custom Rectifier

Lyu, H., Wang, J., La, J-H., Chung, J. & Babakhani, A., Aug 17 2018, Proceedings of the 2018 IEEE/MTT-S International Microwave Symposium, IMS 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-June. p. 1401-1404 4 p. 8439143

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Assistive technology megatrends to support persons with Alzheimer’s disease and related dementias age in habitat: Challenges for usability, engineering and public policy*

Zanwar, P., Heyn, P. C., McGrew, G. & Raji, M., Oct 16 2018, Proceedings of the Human-Habitat for Health (H3): Human-Habitat Multimodal Interaction for Promoting Health and Well-Being in the Internet of Things era - 20th ACM International Conference on Multimodal Interaction, ICMI 2018. Association for Computing Machinery, Inc, (Proceedings of the Human-Habitat for Health (H3): Human-Habitat Multimodal Interaction for Promoting Health and Well-Being in the Internet of Things era - 20th ACM International Conference on Multimodal Interaction, ICMI 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Exploring the combination of large area widefield fluorescence imaging with multiphoton microscopy in the detection of oral epithelial neoplasia

Pal, R., Villarreal, P., Brown, T., Qiu, S., McCammon, S. & Vargas, G., Jan 1 2018, Microscopy Histopathology and Analytics, MICROSCOPY 2018. OSA - The Optical Society, Vol. Part F89-MICROSCOPY 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution