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Dimoklis Gkountaroulis

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Dimoklis Gkountaroulis, PhD

20172025

Research activity per year

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  • 18 Article
  • 1 Conference contribution
  • 1 Review article

  • Topologically Directed Simulations Reveal the Impact of Geometric Constraints on Knotted Proteins

    Barbensi, A., Klotz, A. R. & Gkountaroulis, D., Dec 23 2025, In: Macromolecules. 58, 24, p. 13204-13211 8 p.

    Research output: Contribution to journal › Article › peer-review

  • Theta-curves in proteins

    Dabrowski-Tumanski, P., Goundaroulis, D., Stasiak, A., Rawdon, E. J. & Sulkowska, J. I., Sep 2024, In: Protein Science. 33, 9, e5133.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5   Link opens in a new tab Scopus citations

  • Topology in soft and biological matter

    Tubiana, L., Alexander, G. P., Barbensi, A., Buck, D., Cartwright, J. H. E., Chwastyk, M., Cieplak, M., Coluzza, I., Čopar, S., Craik, D. J., Di Stefano, M., Everaers, R., Faísca, P. F. N., Ferrari, F., Giacometti, A., Goundaroulis, D., Haglund, E., Hou, Y. M., Ilieva, N. & Jackson, S. E. & 39 others, Japaridze, A., Kaplan, N., Klotz, A. R., Li, H., Likos, C. N., Locatelli, E., López-León, T., Machon, T., Micheletti, C., Michieletto, D., Niemi, A., Niemyska, W., Niewieczerzal, S., Nitti, F., Orlandini, E., Pasquali, S., Perlinska, A. P., Podgornik, R., Potestio, R., Pugno, N. M., Ravnik, M., Ricca, R., Rohwer, C. M., Rosa, A., Smrek, J., Souslov, A., Stasiak, A., Steer, D., Sułkowska, J., Sułkowski, P., Sumners, D. W. L., Svaneborg, C., Szymczak, P., Tarenzi, T., Travasso, R., Virnau, P., Vlassopoulos, D., Ziherl, P. & Žumer, S., Jul 18 2024, In: Physics Reports. 1075, p. 1-137 137 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    72   Link opens in a new tab Scopus citations

  • Chromatin alternates between A and B compartments at kilobase scale for subgenic organization

    Harris, H. L., Gu, H., Olshansky, M., Wang, A., Farabella, I., Eliaz, Y., Kalluchi, A., Krishna, A., Jacobs, M., Cauer, G., Pham, M., Rao, S. S. P., Dudchenko, O., Omer, A., Mohajeri, K., Kim, S., Nichols, M. H., Davis, E. S., Gkountaroulis, D. & Udupa, D. & 10 others, Aiden, A. P., Corces, V. G., Phanstiel, D. H., Noble, W. S., Nir, G., Di Pierro, M., Seo, J. S., Talkowski, M. E., Aiden, E. L. & Rowley, M. J., Jun 6 2023, In: Nature communications. 14, 1, p. 3303 3303.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    98   Link opens in a new tab Scopus citations

  • A generalized skein relation for Khovanov homology and a categorification of the θ-invariant

    Chlouveraki, M., Goundaroulis, D., Kontogeorgis, A. & Lambropoulou, S., Dec 8 2021, In: Proceedings of the Royal Society of Edinburgh Section A: Mathematics. 151, 6, p. 1731-1757 27 p.

    Research output: Contribution to journal › Article › peer-review

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