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• 16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics

  Peterson, C. T., Sharma, V., Iablokov, S. N., Albayrak, L., Khanipov, K., Uchitel, S., Chopra, D., Mills, P. J., Fofanov, Y., Rodionov, D. A. & Peterson, S. N., Mar 2019, In: PloS one. 14, 3, e0213869.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neurodegenerative diseases
  • Nootropic Agents
  • Prebiotics
  • neurodegenerative diseases
  • prebiotics
  5 Scopus citations

• Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa)

  Robeson, M. S., Khanipov, K., Golovko, G., Wisely, S. M., White, M. D., Bodenchuck, M., Smyser, T. J., Fofanov, Y., Fierer, N. & Piaggio, A. J., Jan 2018, In: Ecology and Evolution. 8, 1, p. 185-196 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Sus scrofa
  • pig
  • diet
  • stomach content
  • animal
  16 Scopus citations

• Broom: application for non-redundant storage of high throughput sequencing data

  Albayrak, L., Khanipov, K., Golovko, G. & Fofanov, Y., Jan 1 2019, In: Bioinformatics (Oxford, England). 35, 1, p. 143-145 3 p.

  Research output: Contribution to journal › Article › peer-review

  • High Throughput
  • Sequencing
  • Computational Biology
  • Information Storage and Retrieval
  • Research Personnel
  2 Scopus citations

• Broom: Application for non-redundant storage of High Throughput Sequencing data

  Albayrak, L., Khanipov, K., Golovko, G. & Fofanov, Y., May 2 2018, In: Unknown Journal.

  Research output: Contribution to journal › Article › peer-review

  • brooms
  • information storage
  • application coverage
  • Information Storage and Retrieval
  • researchers

• Detection of Multidimensional Co-Exclusion Patterns in Microbial Communities

  Albayrak, L., Khanipov, K., Golovko, G. & Fofanov, Y., May 5 2018, In: Unknown Journal.

  Research output: Contribution to journal › Article › peer-review

  • Microorganisms
  • Microbiota
  • microbiome
  • microbial communities
  • Probiotics

• Detection of multi-dimensional co-exclusion patterns in microbial communities

  Albayrak, L., Khanipov, K., Golovko, G. & Fofanov, Y., Nov 1 2018, In: Bioinformatics. 34, 21, p. 3695-3701 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Probiotics
  • Microbiota
  • Community
  • Pipelines
  • Microorganisms
  4 Scopus citations

• Enhancer associated long non-coding RNA transcription and gene regulation in experimental models of rickettsial infection

  Chowdhury, I. H., Narra, H. P., Sahni, A., Khanipov, K., Fofanov, Y. & Sahni, S. K., 2019, In: Frontiers in immunology. 10, JAN, 3014.

  Research output: Contribution to journal › Article › peer-review

  • Long Noncoding RNA
  • Theoretical Models
  • Spotted Fever Group Rickettsiosis
  • Infection
  • Rickettsia
  3 Scopus citations

• Global transcriptomic profiling of pulmonary gene expression in an experimental murine model of Rickettsia conorii infection

  Narra, H. P., Sahni, A., Khanipov, K., Fofanov, Y. & Sahni, S. K., Mar 2019, In: Genes. 10, 3, 204.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Boutonneuse Fever
  • Gene Expression Profiling
  • Theoretical Models
  • aconitate decarboxylase
  • Lung
  1 Scopus citations

• Identification of Complex Multidimensional Patterns in Microbial Communities

  George, G., Kamil, K., Levent, A. & Yuriy, F., Feb 5 2019, In: Unknown Journal.

  Research output: Contribution to journal › Article › peer-review

  • Probiotics
  • Metabolites
  • Nutrients
  • Microbiota
  • microbiome

• Janibacterspecies with evidence of genomic polymorphism isolated from resected heart valve in a patient with aortic stenosis

  Malania, L., Bai, Y., Khanipov, K., Tsereteli, M., Metreveli, M., Tsereteli, D., Sidamonidze, K., Imnadze, P., Fofanov, Y. & Kosoy, M., 2019, In: Infectious Disease Reports. 11, 2, p. 22-25 4 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Aortic Valve Stenosis
  • Bacteria
  • Whole Genome Sequencing
  • Aortic Valve
  • Agar

• Microbiome interaction networks and community structure from laboratory-reared and field-collected Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus mosquito vectors

  Hegde, S., Khanipov, K., Albayrak, L., Golovko, G., Pimenova, M., Saldaña, M. A., Rojas, M. M., Hornett, E. A., Motl, G. C., Fredregill, C. L., Dennett, J. A., Debboun, M., Fofanov, Y. & Hughes, G. L., Sep 10 2018, In: Frontiers in Microbiology. 9, SEP, 2160.

  Research output: Contribution to journal › Article › peer-review

  • Culex
  • Mosquito Vectors
  • Aedes
  • Microbiota
  • Culicidae
  26 Scopus citations

• Microbiome interaction networks and community structure from lab-reared and field-collected Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus mosquito vectors

  Hegde, S., Khanipov, K., Albayrak, L., Golovko, G., Pimenova, M., Saldaña, M. A., Rojas, M. M., Hornett, E. A., Motl, G. C., Fredregill, C. L., Dennett, J. A., Debboun, M., Fofanov, Y. & Hughes, G., Jun 4 2018, In: Unknown Journal.

  Research output: Contribution to journal › Article › peer-review

  • Culex
  • Mosquito Vectors
  • Aedes
  • Aedes albopictus
  • Culex quinquefasciatus

• Microbiota dysbiosis and its pathophysiological significance in bowel obstruction

  Hegde, S., Lin, Y. M., Golovko, G., Khanipov, K., Cong, Y., Savidge, T., Fofanov, Y. & Shi, X. Z., Dec 1 2018, In: Scientific reports. 8, 1, 13044.

  Research output: Contribution to journal › Article › peer-review

  • Dysbiosis
  • Microbiota
  • Proteobacteria
  • Anti-Bacterial Agents
  • Colon
  9 Scopus citations

• Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa

  Jeffries, C. L., Lawrence, G. G., Golovko, G., Kristan, M., Orsborne, J., Spence, K., Hurn, E., Bandibabone, J., Tantely, M. L., Raharimalala, F. N., Keita, K., Camara, D., Barry, Y., Wat’senga, F., Manzambi, E. Z., Afrane, Y. A., Mohammed, A. R., Abeku, T. A., Hegde, S., Khanipov, K. & 6 others, Pimenova, M., Fofanov, Y., Boyer, S., Irish, S. R., Hughes, G. & Walker, T., Jun 7 2018, In: Unknown Journal.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Wolbachia
  • Anopheles
  • Sub-Saharan Africa
  • Africa South of the Sahara
  • malaria

• Novel wolbachia strains in anopheles malaria vectors from sub-saharan africa [version 2; referees: 3 approved]

  Jeffries, C. L., Lawrence, G. G., Golovko, G., Kristan, M., Orsborne, J., Spence, K., Hurn, E., Bandibabone, J., Tantely, L. M., Raharimalala, F. N., Keita, K., Camara, D., Barry, Y., Wat’senga, F., Manzambi, E. Z., Afrane, Y. A., Mohammed, A. R., Abeku, T. A., Hegde, S., Khanipov, K. & 6 others, Pimenova, M., Fofanov, Y., Boyer, S., Irish, S. R., Hughes, G. L. & Walker, T., 2018, In: Wellcome Open Research. 3, 113.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Wolbachia
  • Anopheles
  • Africa South of the Sahara
  • Malaria
  • Bacteria
  22 Scopus citations

• Using High Throughput DNA Sequencing to Evaluate the Accuracy of Serial Dilution Based Tests of Microbial Activities in Oil Pipelines

  Khanipov, K., Golovko, G., Rojas, M., Pimenova, M., Albayrak, L., Chumakov, S., Duarte, R., Widger, W. R., Pickthall, T. & Fofanov, Y., May 16 2018, In: Unknown Journal.

  Research output: Contribution to journal › Article › peer-review

  • high-throughput nucleotide sequencing
  • High-Throughput Nucleotide Sequencing
  • Dilution
  • microbial activity
  • Oils

• Viral RNA-dependent RNA polymerase mutants display an altered mutation spectrum resulting in attenuation in both mosquito and vertebrate hosts

  Lane Warmbrod, K., Patterson, E. I., Kautz, T. F., Stanton, A., Rockx-Brouwer, D., Kalveram, B. K., Khanipov, K., Thangamani, S., Fofanov, Y. & Forrester, N. L., 2019, In: PLoS pathogens. 15, 4, e1007610.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • RNA Replicase
  • Viral RNA
  • Culicidae
  • Vertebrates
  • Mutation Rate
  8 Scopus citations