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• Article

  An iron-sulfur cluster in the polymerase domain of yeast DNA polymerase ε

  Jain, R., Vanamee, E. S., Dzikovski, B. G., Buku, A., Johnson, R. E., Prakash, L., Prakash, S. & Aggarwal, A. K., Jan 23 2014, In: Journal of Molecular Biology. 426, 2, p. 301-308 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Sulfur
  • DNA-Directed DNA Polymerase
  • Iron
  • Yeasts
  • Exonucleases
  25 Scopus citations

• A novel ubiquitin binding mode in the S. cerevisiae translesion synthesis DNA polymerase η

  Ai, Y., Wang, J., Johnson, R. E., Haracska, L., Prakash, L. & Zhuang, Z., Jun 1 2011, In: Molecular BioSystems. 7, 6, p. 1874-1882 9 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA-Directed DNA Polymerase
  • Ubiquitin
  • Saccharomyces cerevisiae
  • Zinc Fingers
  • Surface Plasmon Resonance
  7 Scopus citations

• A role for DNA polymerase θ in promoting replication through oxidative DNA lesion, thymine glycol, in human cells

  Yoon, J. H., Choudhury, J. R., Park, J., Prakash, S. & Prakash, L., 2014, In: Journal of Biological Chemistry. 289, 19, p. 13177-13185 9 p.

  Research output: Contribution to journal › Article › peer-review

  • thymine glycol
  • DNA-Directed DNA Polymerase
  • Cells
  • DNA polymerase A
  • DNA
  35 Scopus citations

• Crystal structure of yeast DNA polymerase ε catalytic domain

  Jain, R., Rajashankar, K. R., Buku, A., Johnson, R. E., Prakash, L., Prakash, S. & Aggarwal, A. K., Apr 14 2014, In: PloS one. 9, 4, e94835.

  Research output: Contribution to journal › Article › peer-review

  • Exonucleases
  • Crystal structure
  • Yeast
  • DNA-Directed DNA Polymerase
  • DNA-directed DNA polymerase
  23 Scopus citations

• DNA synthesis across an abasic lesion by yeast Rev1 DNA polymerase

  Nair, D. T., Johnson, R. E., Prakash, L., Prakash, S. & Aggarwal, A. K., Feb 11 2011, In: Journal of Molecular Biology. 406, 1, p. 18-28 11 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA-Directed DNA Polymerase
  • Arginine
  • Nucleotides
  • Yeasts
  • 2'-deoxycytidine 5'-triphosphate
  26 Scopus citations

• Genetic control of translesion synthesis on leading and lagging DNA strands in plasmids derived from epstein-barr virus in human cells

  Yoon, J. H., Prakash, S. & Prakash, L., 2012, In: mBio. 3, 5, e00271-12.

  Research output: Contribution to journal › Article › peer-review

  • Human Herpesvirus 4
  • Plasmids
  • DNA
  • Replicon
  • Replication Origin
  5 Scopus citations

• Genetic evidence for reconfiguration of DNA polymerase θ active site for error-free translesion synthesis in human cells

  Yoon, J. H., Johnson, R. E., Prakash, L. & Prakash, S., May 1 2020, In: Journal of Biological Chemistry. 295, 18, p. 5918-5927 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • DNA-Directed DNA Polymerase
  • Cells
  • Catalytic Domain
  • Conformations
  • Base Pairing
  1 Scopus citations

• Human DNA polymerase α in binary complex with a DNA:DNA template-primer

  Coloma, J., Johnson, R. E., Prakash, L., Prakash, S. & Aggarwal, A. K., Apr 1 2016, In: Scientific reports. 6, 23784.

  Research output: Contribution to journal › Article › peer-review

  • DNA Primers
  • DNA-Directed DNA Polymerase
  • DNA
  • RNA primers
  • Eukaryota
  14 Scopus citations

• Human DNA polymerase η is pre-aligned for dNTP binding and catalysis

  Ummat, A., Silverstein, T. D., Jain, R., Buku, A., Johnson, R. E., Prakash, L., Prakash, S. & Aggarwal, A. K., Jan 27 2012, In: Journal of Molecular Biology. 415, 4, p. 627-634 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Catalysis
  • DNA-Directed DNA Polymerase
  • Catalytic Domain
  • Metals
  • DNA
  26 Scopus citations

• Identification of two functional PCNA-binding domains in human DNA polymerase κ

  Yoon, J. H., Acharya, N., Park, J., Basu, D., Prakash, S. & Prakash, L., Jul 2014, In: Genes to Cells. 19, 7, p. 594-601 8 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA-Directed DNA Polymerase
  • Proliferating Cell Nuclear Antigen
  • thymine glycol
  • Replication Protein C
  • Replication Protein A
  14 Scopus citations

• PCNA binding domains in all three subunits of yeast DNA polymerase δ modulate its function in DNA replication

  Acharya, N., Klassen, R., Johnson, R. E., Prakash, L. & Prakash, S., Nov 1 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 44, p. 17927-17932 6 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA-Directed DNA Polymerase
  • Proliferating Cell Nuclear Antigen
  • DNA Replication
  • Yeasts
  • Amino Acid Motifs
  44 Scopus citations

• Pol31 and Pol32 subunits of yeast DNA polymerase δ are also essential subunits of DNA polymerase ζ

  Johnson, R. E., Prakash, L. & Prakash, S., Jul 31 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 31, p. 12455-12460 6 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA-Directed DNA Polymerase
  • Yeasts
  • pol Gene Products
  • Nucleotides
  • Enzymes
  116 Scopus citations

• Requirement of Rad18 protein for replication through DNA lesions in mouse and human cells

  Yoon, J. H., Prakash, S. & Prakash, L., May 15 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 20, p. 7799-7804 6 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA Replication
  • Chickens
  • Proteins
  • Ubiquitin-Conjugating Enzymes
  • Pyrimidine Dimers
  19 Scopus citations

• Requirement of replication checkpoint protein kinases Mec1/Rad53 for postreplication repair in yeast

  Gangavarapu, V., Maria, S. R. S., Prakash, S. & Prakash, L., 2011, In: mBio. 2, 3, e00079-11.

  Research output: Contribution to journal › Article › peer-review

  • Protein Kinases
  • Yeasts
  • DNA-Directed DNA Polymerase
  • DNA Replication
  • Saccharomyces cerevisiae
  13 Scopus citations

• Role of human DNA polymerase κ in extension opposite from a cis-syn thymine dimer

  Vasquez-Del Carpio, R., Silverstein, T. D., Lone, S., Johnson, R. E., Prakash, L., Prakash, S. & Aggarwal, A. K., Apr 29 2011, In: Journal of Molecular Biology. 408, 2, p. 252-261 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Pyrimidine Dimers
  • DNA-Directed DNA Polymerase
  • Nucleotides
  • Pyrimidines
  • DNA
  14 Scopus citations

• Structural basis for cisplatin DNA damage tolerance by human polymerase η during cancer chemotherapy

  Ummat, A., Rechkoblit, O., Jain, R., Roy Choudhury, J., Johnson, R. E., Silverstein, T. D., Buku, A., Lone, S., Prakash, L., Prakash, S. & Aggarwal, A. K., Jun 1 2012, In: Nature Structural and Molecular Biology. 19, 6, p. 628-632 5 p.

  Research output: Contribution to journal › Article › peer-review

  • 2'-deoxycytidine 5'-triphosphate
  • Cisplatin
  • DNA Damage
  • Drug Therapy
  • Neoplasms
  59 Scopus citations

• Structure and mechanism of B-family DNA polymerase ζ specialized for translesion DNA synthesis

  Malik, R., Kopylov, M., Gomez-Llorente, Y., Jain, R., Johnson, R. E., Prakash, L., Prakash, S., Ubarretxena-Belandia, I. & Aggarwal, A. K., Oct 1 2020, In: Nature Structural and Molecular Biology. 27, 10, p. 913-924 12 p.

  Research output: Contribution to journal › Article › peer-review

  • DNA-Directed DNA Polymerase
  • DNA
  • Holoenzymes
  • Nucleotides
  • Neoplasms
  6 Scopus citations

• Structure and mechanism of human PrimPol, a DNA polymerase with primase activity

  Rechkoblit, O., Gupta, Y. K., Malik, R., Rajashankar, K. R., Johnson, R. E., Prakash, L., Prakash, S. & Aggarwal, A. K., Oct 2016, In: Science Advances. 2, 10, e1601317.

  Research output: Contribution to journal › Article › peer-review

  • DNA Primase
  • DNA-Directed DNA Polymerase
  • DNA Primers
  • Enzymes
  • DNA
  33 Scopus citations

• The Architecture of Yeast DNA Polymerase ζ

  Gómez-Llorente, Y., Malik, R., Jain, R., Choudhury, J. R., Johnson, R. E., Prakash, L., Prakash, S., Ubarretxena-Belandia, I. & Aggarwal, A. K., Oct 17 2013, In: Cell Reports. 5, 1, p. 79-86 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Yeast
  • DNA-Directed DNA Polymerase
  • Catalytic Domain
  • Yeasts
  • Electron microscopy
  22 Scopus citations
• Comment/debate

  Corrigendum: DNA polymerase θ accomplishes translesion synthesis opposite 1,N⁶-ethenodeoxyadenosine with a remarkably high fidelity in human cells

  Yoon, J. H., Johnson, R. E., Prakash, L. & Prakash, S., Jan 1 2020, In: Genes & development. 34, 1-2, p. 146 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
• Letter

  Response to Burgers et al.

  Johnson, R. E., Klassen, R., Prakash, L. & Prakash, S., Feb 18 2016, In: Molecular cell. 61, 4, p. 494-495 2 p.

  Research output: Contribution to journal › Letter › peer-review
  6 Scopus citations