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Article

Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1

Zandarashvili, L., Vuzman, D., Esadze, A., Takayama, Y., Sahu, D., Levy, Y. & Iwahara, J., Jun 26 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 26, p. E1724-E1732

Research output: Contribution to journal › Article › peer-review

76 Scopus citations

Detecting Counterion Dynamics in DNA–Protein Association

Pletka, C. C., Nepravishta, R. & Iwahara, J., Jan 20 2020, In: Angewandte Chemie - International Edition. 59, 4, p. 1465-1468 4 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Direct detection of lysine side chain NH₃⁺ in protein-heparin complexes using NMR spectroscopy

Sepuru, K. M., Iwahara, J. & Rajarathnam, K., Feb 7 2018, In: Analyst. 143, 3, p. 635-638 4 p.

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Dynamics of ionic interactions at protein-nucleic acid interfaces

Yu, B., Pettitt, B. M. & Iwahara, J., Sep 15 2020, In: Accounts of Chemical Research. 53, 9, p. 1802-1810 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Dynamics of lysine side-chain amino groups in a protein studied by heteronuclear ¹H-¹⁵N NMR spectroscopy

Esadze, A., Li, D. W., Wang, T., Brüschweiler, R. & Iwahara, J., Feb 2 2011, In: Journal of the American Chemical Society. 133, 4, p. 909-919 11 p.

Research output: Contribution to journal › Article › peer-review

60 Scopus citations

Effective strategy to assign 1H-15N heteronuclear correlation NMR signals from lysine side-chain NH<inf>3</inf> + groups of proteins at low temperature

Esadze, A., Zandarashvili, L. & Iwahara, J., 2014, In: Journal of Biomolecular NMR. 60, 1, p. 23-27 5 p.

Research output: Contribution to journal › Article › peer-review

16 Scopus citations

Hydrogen-exchange kinetics studied through analysis of self-decoupling of nuclear magnetic resonance

Nepravishta, R., Yu, B. & Iwahara, J., Mar 2020, In: Journal of Magnetic Resonance. 312, 106687.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Impact of two-bond ¹⁵N–¹⁵N scalar couplings on ¹⁵N transverse relaxation measurements for arginine side chains of proteins

Nguyen, D. & Iwahara, J., May 1 2018, In: Journal of Biomolecular NMR. 71, 1, p. 45-51 7 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Lysines and Arginines play non-redundant roles in mediating chemokine-glycosaminoglycan interactions

Joseph, P. R. B., Sawant, K. V., Iwahara, J., Garofalo, R. P., Desai, U. R. & Rajarathnam, K., Dec 1 2018, In: Scientific reports. 8, 1, 12289.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

NMR Observation of Intermolecular Hydrogen Bonds between Protein Tyrosine Side-Chain OH and DNA Phosphate Groups

Yu, B., Pletka, C. C. & Iwahara, J., Feb 13 2020, In: Journal of Physical Chemistry B. 124, 6, p. 1065-1070 6 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Positive and negative impacts of nonspecific sites during target location by a sequence-specific DNA-binding protein: Origin of the optimal search at physiological ionic strength

Esadze, A., Kemme, C. A., Kolomeisky, A. B. & Iwahara, J., Jun 17 2014, In: Nucleic acids research. 42, 11, p. 7039-7046 8 p.

Research output: Contribution to journal › Article › peer-review

51 Scopus citations

Racemic phosphorothioate as a tool for NMR investigations of protein-DNA complexes

Nepravishta, R., Pletka, C. C. & Iwahara, J., Sep 1 2020, In: Journal of Biomolecular NMR. 74, 8-9, p. 421-429 9 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Signature of mobile hydrogen bonding of lysine side chains from long-range ¹⁵N-¹³C scalar J-couplings and computation

Zandarashvili, L., Li, D. W., Wang, T., Brüschweiler, R. & Iwahara, J., Jun 22 2011, In: Journal of the American Chemical Society. 133, 24, p. 9192-9195 4 p.

Research output: Contribution to journal › Article › peer-review

29 Scopus citations

Stopped-flow fluorescence kinetic study of protein sliding and intersegment transfer in the target DNA search process

Esadze, A. & Iwahara, J., Jan 9 2014, In: Journal of Molecular Biology. 426, 1, p. 230-244 15 p.

Research output: Contribution to journal › Article › peer-review

42 Scopus citations

Review article

NMR-based investigations into target DNA search processes of proteins

Iwahara, J., Zandarashvili, L., Kemme, C. A. & Esadze, A., Sep 15 2018, In: Methods. 148, p. 57-66 10 p.

Research output: Contribution to journal › Review article › peer-review

9 Scopus citations

Filters for Publications

Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1

Detecting Counterion Dynamics in DNA–Protein Association

Direct detection of lysine side chain NH₃⁺ in protein-heparin complexes using NMR spectroscopy

Dynamics of ionic interactions at protein-nucleic acid interfaces

Dynamics of lysine side-chain amino groups in a protein studied by heteronuclear ¹H-¹⁵N NMR spectroscopy

Effective strategy to assign <sup>1</sup>H-<sup>15</sup>N heteronuclear correlation NMR signals from lysine side-chain NH<inf>3</inf> <sup>+</sup> groups of proteins at low temperature

Hydrogen-exchange kinetics studied through analysis of self-decoupling of nuclear magnetic resonance

Impact of two-bond ¹⁵N–¹⁵N scalar couplings on ¹⁵N transverse relaxation measurements for arginine side chains of proteins

Lysines and Arginines play non-redundant roles in mediating chemokine-glycosaminoglycan interactions

NMR Observation of Intermolecular Hydrogen Bonds between Protein Tyrosine Side-Chain OH and DNA Phosphate Groups

Positive and negative impacts of nonspecific sites during target location by a sequence-specific DNA-binding protein: Origin of the optimal search at physiological ionic strength

Racemic phosphorothioate as a tool for NMR investigations of protein-DNA complexes

Signature of mobile hydrogen bonding of lysine side chains from long-range ¹⁵N-¹³C scalar J-couplings and computation

Stopped-flow fluorescence kinetic study of protein sliding and intersegment transfer in the target DNA search process

NMR-based investigations into target DNA search processes of proteins

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