Characterization of Rift Valley fever virus transcriptional terminations

Tetsuro Ikegami, Sungyong Won, C. J. Peters, Shinji Makino

Research output: Contribution to journalArticle

35 Citations (Scopus)

Abstract

Rift Valley fever virus (RVFV) (genus Phlebovirus, family Bunyaviridae) has a tripartite negative-strand genome and causes a mosquito-borne disease among humans and livestock in sub-Saharan African and Arabian Peninsula countries. Phlebovirus L, M, and N mRNAs are synthesized from the virus-sense RNA segments, while NSs mRNA is transcribed from the anti-virus-sense S segment. The present study determined the 3′ termini of all RVFV mRNAs. The 3′ termini of N and NSs mRNAs were mapped within the S-segment intergenic region and were complementary to each other by 30 to 60 nucleotides. The termini of M and L mRNAs were mapped within 122 to 107 nucleotides and 16 to 41 nucleotides, respectively, from the 5′ ends of their templates. Viral RNA elements that control phlebovirus transcriptional terminations are largely unknown. Our studies suggested the importance of a pentanucleotide sequence, CGUCG, for N, NSs, and M mRNA transcription terminations. Homopolymeric tracts of C sequences, which were located upstream of the pentanucleotide sequence, promoted N and M mRNA terminations. Likewise, the homopolymeric tracts of G sequences that are found upstream of the pentanucleotide sequence promoted NSs mRNA termination. The L-segment 5′-untranslated region (L-5′ UTR) had neither the pentanucleotide sequence nor homopolymeric sequences, yet replacement of the S-segment intergenic region with the L-5′ UTR exerted N mRNA termination in an infectious virus. The L-5′ UTR contained two 13-nucleotide-long complete complementary sequences, and their sequence complementarities were important for L mRNA termination. A computer-mediated RNA secondary structure analysis further suggested that RNA secondary structures formed by the sections of the two 13-nucleotide-long sequences and by the sequence between them may have a role in L mRNA termination. Our data demonstrated that viral RNA elements that govern L mRNA termination differed from those that regulate mRNA terminations in the M and S segments.

Original languageEnglish (US)
Pages (from-to)8421-8438
Number of pages18
JournalJournal of Virology
Volume81
Issue number16
DOIs
StatePublished - Aug 2007

Fingerprint

Rift Valley fever virus
Phlebovirus
nucleotides
RNA
5' untranslated regions
Messenger RNA
intergenic DNA
viruses
mosquito-borne diseases
Bunyaviridae
5' Untranslated Regions
Nucleotides
Intergenic DNA
Viral RNA
livestock
transcription (genetics)
genome
Molecular Computers
Viruses
RNA Viruses

ASJC Scopus subject areas

  • Immunology

Cite this

Characterization of Rift Valley fever virus transcriptional terminations. / Ikegami, Tetsuro; Won, Sungyong; Peters, C. J.; Makino, Shinji.

In: Journal of Virology, Vol. 81, No. 16, 08.2007, p. 8421-8438.

Research output: Contribution to journalArticle

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