Chromosome-Level Genome Assembly and Annotation of a Periodical Cicada Species: Magicicada septendecula

  • Jonas Bush
  • , Cynthia Webster
  • , Jill Wegrzyn
  • , Chris Simon
  • , Edward Wilcox
  • , Ruqayya Khan
  • , David Weisz
  • , Olga Dudchenko
  • , Erez Lieberman Aiden
  • , Paul Frandsen

Research output: Contribution to journalArticlepeer-review

5 Scopus citations

Abstract

We present a high-quality assembly and annotation of the periodical cicada species, Magicicada septendecula (Hemiptera: Auchenorrhyncha: Cicadidae). Periodical cicadas have a significant ecological impact, serving as a food source for many mammals, reptiles, and birds. Magicicada are well known for their massive emergences of 1 to 3 species that appear in different locations in the eastern United States nearly every year. These year classes ("broods") emerge dependably every 13 or 17 yr in a given location. Recently, it has become clear that 4-yr early or late emergences of a sizeable portion of a population are an important part of the history of brood formation; however, the biological mechanisms by which they track the passage of time remain a mystery. Using PacBio HiFi reads in conjunction with Hi-C proximity ligation data, we have assembled and annotated the first whole genome for a periodical cicada, an important resource for future phylogenetic and comparative genomic analysis. This also represents the first quality genome assembly and annotation for the Hemipteran superfamily Cicadoidea. With a scaffold N50 of 518.9 Mb and a complete BUSCO score of 96.7%, we are confident that this assembly will serve as a vital resource toward uncovering the genomic basis of periodical cicadas' long, synchronized life cycles and will provide a robust framework for further investigations into these insects.

Original languageEnglish (US)
Article numberevae001
JournalGenome Biology and Evolution
Volume16
Issue number1
DOIs
StatePublished - Jan 1 2024
Externally publishedYes

Keywords

  • Hemiptera
  • HiC
  • annotation
  • assembly
  • cicada
  • genomics

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics

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