Communication: Origin of the contributions to DNA structure in phages

Christopher G. Myers, Bernard Pettitt

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Cryo electron microscopy (cryo-EM) data of the interior of phages show ordering of the interior DNA that has been interpreted as a nearly perfectly ordered polymer. We show surface-induced correlations, excluded volume, and electrostatic forces are sufficient to predict most of the major features of the current structural data for DNA packaged within viral capsids without additional ordering due to elastic bending forces for the polymer. Current models assume highly-ordered, even spooled, hexagonally packed conformations based on interpretation of cryo-EM density maps. We show herein that the surface induced packing of short (6mer), unconnected DNA polymer segments is the only necessary ingredient in creating ringed densities consistent with experimental density maps. This implies the ensemble of possible conformations of polymeric DNA within the capsid that are consistent with cryo-EM data may be much larger than implied by traditional interpretations where such rings can only result from highly-ordered spool-like conformations. This opens the possibility of a more disordered, entropically-driven view of phage packaging thermodynamics. We also show the electrostatics of the DNA contributes a large portion of the internal hydrostatic and osmotic pressures of a phage virion, suggesting that nonlinear elastic anomalies might reduce the overall elastic bending enthalpy of more disordered conformations to have allowable free energies.

Original languageEnglish (US)
Article number071103
JournalJournal of Chemical Physics
Volume138
Issue number7
DOIs
StatePublished - Feb 21 2013

Fingerprint

Bacteriophages
Cryoelectron Microscopy
deoxyribonucleic acid
communication
Conformations
Polymers
elastic bending
Capsid
DNA
Communication
Electron microscopy
Static Electricity
electron microscopy
Nucleic Acid Conformation
polymers
Hydrostatic Pressure
spools
electrostatics
Osmotic Pressure
Product Packaging

ASJC Scopus subject areas

  • Physics and Astronomy(all)
  • Physical and Theoretical Chemistry
  • Medicine(all)

Cite this

Communication : Origin of the contributions to DNA structure in phages. / Myers, Christopher G.; Pettitt, Bernard.

In: Journal of Chemical Physics, Vol. 138, No. 7, 071103, 21.02.2013.

Research output: Contribution to journalArticle

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