Conformational effects of substituting methionine with (2S,3S)-2,3-methanomethionine in Phe-Met-Arg-Phe-NH2

Kevin Burgess, Kwok Kan Ho, Bernard Pettitt

Research output: Contribution to journalArticle

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Abstract

The conformational influences of (2S,3S)-2,3-methanomethionine ((2S,3S)-cyclo-Met or (2S,3S)-cyclo-M) were studied to ascertain possible effects of substituting such constrained amino acids into small peptides. The peptide chosen for study was the anti-opiate Phe-Met-Arg-Phe-NH2 (FMRF-NH2 using the one-letter code). Consequently, FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2 were prepared, and studied by NMR in DMSO. Protons of the parent peptide had no anomalous chemical shifts, no shallow temperature coefficients for variations of NH chemical shifts with temperature, and no interresidue ROE cross-peaks except for the sequential backbone signals. These results were as expected for a random coil conformation. Conversely, F{(2S,3S)-cyclo-M}RF-NH2 gave NMR spectra with indications of a bias toward defined secondary structures in solution. Computer-assisted molecular simulations were carried out to visualize these conformational biases. Thus, parameters for the 2,3-methanoamino acid were developed using literature values for bond vectors from crystallography, and CHARMM defaults. The validity of these parameters was accessed from Ramachandran plots for derivatives of the type Ac-{cyclo-M}NHMe. These parameters were then used for a comparative quenched molecular dynamics (QMD) study of FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2, without invoking constraints from the NMR data. Data (presented as Φ, ψ dot plots) from the downloaded simulated conformations at 1000 K, and for the energy-minimized forms of these conformations, could be easily rationalized on the basis of reasonable conformational biases about the amino acid residues. The rigidly oriented side chains of the (E)-cyclo-Met derivative (wherein the α-amino group and the side chain are trans with respect to the cyclopropane ring) had a more severe effect on the allowable ψ values than on the Φ torsions. The lowest energy structures generated in the dynamics run after minimization were grouped into families to give representations of related conformers. Finally, the results from the NMR and QMD studies were compared. For F{(2S,3S)-cyclo-M}RF-NH2 a good correlation was found, indicating a bias toward a γ-turn structure in solution. We predict that (E)-cyclo-Met residues in larger peptides could induce formation of turn or 310-helical structures.

Original languageEnglish (US)
Pages (from-to)54-65
Number of pages12
JournalJournal of the American Chemical Society
Volume117
Issue number1
DOIs
StatePublished - Jan 11 1995
Externally publishedYes

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FMRFamide
Methionine
Peptides
Nuclear magnetic resonance
Conformations
Chemical shift
Molecular Dynamics Simulation
Molecular dynamics
Amino acids
Opiate Alkaloids
Molecular Computers
Derivatives
Amino Acids
Crystallography
Temperature
Dimethyl Sulfoxide
Torsional stress
Protons
Acids
2,3-methanomethionine

ASJC Scopus subject areas

  • Chemistry(all)

Cite this

Conformational effects of substituting methionine with (2S,3S)-2,3-methanomethionine in Phe-Met-Arg-Phe-NH2 . / Burgess, Kevin; Ho, Kwok Kan; Pettitt, Bernard.

In: Journal of the American Chemical Society, Vol. 117, No. 1, 11.01.1995, p. 54-65.

Research output: Contribution to journalArticle

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abstract = "The conformational influences of (2S,3S)-2,3-methanomethionine ((2S,3S)-cyclo-Met or (2S,3S)-cyclo-M) were studied to ascertain possible effects of substituting such constrained amino acids into small peptides. The peptide chosen for study was the anti-opiate Phe-Met-Arg-Phe-NH2 (FMRF-NH2 using the one-letter code). Consequently, FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2 were prepared, and studied by NMR in DMSO. Protons of the parent peptide had no anomalous chemical shifts, no shallow temperature coefficients for variations of NH chemical shifts with temperature, and no interresidue ROE cross-peaks except for the sequential backbone signals. These results were as expected for a random coil conformation. Conversely, F{(2S,3S)-cyclo-M}RF-NH2 gave NMR spectra with indications of a bias toward defined secondary structures in solution. Computer-assisted molecular simulations were carried out to visualize these conformational biases. Thus, parameters for the 2,3-methanoamino acid were developed using literature values for bond vectors from crystallography, and CHARMM defaults. The validity of these parameters was accessed from Ramachandran plots for derivatives of the type Ac-{cyclo-M}NHMe. These parameters were then used for a comparative quenched molecular dynamics (QMD) study of FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2, without invoking constraints from the NMR data. Data (presented as Φ, ψ dot plots) from the downloaded simulated conformations at 1000 K, and for the energy-minimized forms of these conformations, could be easily rationalized on the basis of reasonable conformational biases about the amino acid residues. The rigidly oriented side chains of the (E)-cyclo-Met derivative (wherein the α-amino group and the side chain are trans with respect to the cyclopropane ring) had a more severe effect on the allowable ψ values than on the Φ torsions. The lowest energy structures generated in the dynamics run after minimization were grouped into families to give representations of related conformers. Finally, the results from the NMR and QMD studies were compared. For F{(2S,3S)-cyclo-M}RF-NH2 a good correlation was found, indicating a bias toward a γ-turn structure in solution. We predict that (E)-cyclo-Met residues in larger peptides could induce formation of turn or 310-helical structures.",
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T1 - Conformational effects of substituting methionine with (2S,3S)-2,3-methanomethionine in Phe-Met-Arg-Phe-NH2

AU - Burgess, Kevin

AU - Ho, Kwok Kan

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N2 - The conformational influences of (2S,3S)-2,3-methanomethionine ((2S,3S)-cyclo-Met or (2S,3S)-cyclo-M) were studied to ascertain possible effects of substituting such constrained amino acids into small peptides. The peptide chosen for study was the anti-opiate Phe-Met-Arg-Phe-NH2 (FMRF-NH2 using the one-letter code). Consequently, FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2 were prepared, and studied by NMR in DMSO. Protons of the parent peptide had no anomalous chemical shifts, no shallow temperature coefficients for variations of NH chemical shifts with temperature, and no interresidue ROE cross-peaks except for the sequential backbone signals. These results were as expected for a random coil conformation. Conversely, F{(2S,3S)-cyclo-M}RF-NH2 gave NMR spectra with indications of a bias toward defined secondary structures in solution. Computer-assisted molecular simulations were carried out to visualize these conformational biases. Thus, parameters for the 2,3-methanoamino acid were developed using literature values for bond vectors from crystallography, and CHARMM defaults. The validity of these parameters was accessed from Ramachandran plots for derivatives of the type Ac-{cyclo-M}NHMe. These parameters were then used for a comparative quenched molecular dynamics (QMD) study of FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2, without invoking constraints from the NMR data. Data (presented as Φ, ψ dot plots) from the downloaded simulated conformations at 1000 K, and for the energy-minimized forms of these conformations, could be easily rationalized on the basis of reasonable conformational biases about the amino acid residues. The rigidly oriented side chains of the (E)-cyclo-Met derivative (wherein the α-amino group and the side chain are trans with respect to the cyclopropane ring) had a more severe effect on the allowable ψ values than on the Φ torsions. The lowest energy structures generated in the dynamics run after minimization were grouped into families to give representations of related conformers. Finally, the results from the NMR and QMD studies were compared. For F{(2S,3S)-cyclo-M}RF-NH2 a good correlation was found, indicating a bias toward a γ-turn structure in solution. We predict that (E)-cyclo-Met residues in larger peptides could induce formation of turn or 310-helical structures.

AB - The conformational influences of (2S,3S)-2,3-methanomethionine ((2S,3S)-cyclo-Met or (2S,3S)-cyclo-M) were studied to ascertain possible effects of substituting such constrained amino acids into small peptides. The peptide chosen for study was the anti-opiate Phe-Met-Arg-Phe-NH2 (FMRF-NH2 using the one-letter code). Consequently, FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2 were prepared, and studied by NMR in DMSO. Protons of the parent peptide had no anomalous chemical shifts, no shallow temperature coefficients for variations of NH chemical shifts with temperature, and no interresidue ROE cross-peaks except for the sequential backbone signals. These results were as expected for a random coil conformation. Conversely, F{(2S,3S)-cyclo-M}RF-NH2 gave NMR spectra with indications of a bias toward defined secondary structures in solution. Computer-assisted molecular simulations were carried out to visualize these conformational biases. Thus, parameters for the 2,3-methanoamino acid were developed using literature values for bond vectors from crystallography, and CHARMM defaults. The validity of these parameters was accessed from Ramachandran plots for derivatives of the type Ac-{cyclo-M}NHMe. These parameters were then used for a comparative quenched molecular dynamics (QMD) study of FMRF-NH2 and F{(2S,3S)-cyclo-M}RF-NH2, without invoking constraints from the NMR data. Data (presented as Φ, ψ dot plots) from the downloaded simulated conformations at 1000 K, and for the energy-minimized forms of these conformations, could be easily rationalized on the basis of reasonable conformational biases about the amino acid residues. The rigidly oriented side chains of the (E)-cyclo-Met derivative (wherein the α-amino group and the side chain are trans with respect to the cyclopropane ring) had a more severe effect on the allowable ψ values than on the Φ torsions. The lowest energy structures generated in the dynamics run after minimization were grouped into families to give representations of related conformers. Finally, the results from the NMR and QMD studies were compared. For F{(2S,3S)-cyclo-M}RF-NH2 a good correlation was found, indicating a bias toward a γ-turn structure in solution. We predict that (E)-cyclo-Met residues in larger peptides could induce formation of turn or 310-helical structures.

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