Discovery Proteomics and Nonparametric Modeling Pipeline in the Development of a Candidate Biomarker Panel for Dengue Hemorrhagic Fever

Allan R. Brasier, Josefina Garcia, John E. Wiktorowicz, Heidi M. Spratt, Guillermo Comach, Hyunsu Ju, Adrian Recinos, Kizhake Soman, Brett M. Forshey, Eric S. Halsey, Patrick J. Blair, Claudio Rocha, Isabel Bazan, Sundar S. Victor, Zheng Wu, Susan Stafford, Douglas Watts, Amy C. Morrison, Thomas W. Scott, Tadeusz J. KochelGloria Sierra, Iris Villalobos, Carlos Espino

Research output: Contribution to journalArticle

28 Scopus citations

Abstract

Secondary dengue viral infection can produce capillary leakage associated with increased mortality known as dengue hemorrhagic fever (DHF). Because the mortality of DHF can be reduced by early detection and intensive support, improved methods for its detection are needed. We applied multidimensional protein profiling to predict outcomes in a prospective dengue surveillance study in South America. Plasma samples taken from initial clinical presentation of acute dengue infection were subjected to proteomics analyses using ELISA and a recently developed biofluid analysis platform. Demographics, clinical laboratory measurements, nine cytokines, and 419 plasma proteins collected at the time of initial presentation were compared between the DF and DHF outcomes. Here, the subject's gender, clinical parameters, two cytokines, and 42 proteins discriminated between the outcomes. These factors were reduced by multivariate adaptive regression splines (MARS) that a highly accurate classification model based on eight discriminant features with an area under the receiver operator curve (AUC) of 0.999. Model analysis indicated that the feature-outcome relationship were nonlinear. Although this DHF risk model will need validation in a larger cohort, we conclude that approaches to develop predictive biomarker models for disease outcome will need to incorporate nonparametric modeling approaches.

Original languageEnglish (US)
Pages (from-to)8-20
Number of pages13
JournalClinical and translational science
Volume5
Issue number1
DOIs
StatePublished - Feb 1 2012

Keywords

  • Hemorrhagic disorders and therapies
  • Host response
  • Infectious disease
  • Plasma
  • Proteins
  • Viral infection

ASJC Scopus subject areas

  • Neuroscience(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Pharmacology, Toxicology and Pharmaceutics(all)

Fingerprint Dive into the research topics of 'Discovery Proteomics and Nonparametric Modeling Pipeline in the Development of a Candidate Biomarker Panel for Dengue Hemorrhagic Fever'. Together they form a unique fingerprint.

  • Cite this

    Brasier, A. R., Garcia, J., Wiktorowicz, J. E., Spratt, H. M., Comach, G., Ju, H., Recinos, A., Soman, K., Forshey, B. M., Halsey, E. S., Blair, P. J., Rocha, C., Bazan, I., Victor, S. S., Wu, Z., Stafford, S., Watts, D., Morrison, A. C., Scott, T. W., ... Espino, C. (2012). Discovery Proteomics and Nonparametric Modeling Pipeline in the Development of a Candidate Biomarker Panel for Dengue Hemorrhagic Fever. Clinical and translational science, 5(1), 8-20. https://doi.org/10.1111/j.1752-8062.2011.00377.x