Abstract
Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI (ODC-TBI) is a community-centered repository emphasizing Findable, Accessible, Interoperable, and Reusable data sharing and publication with persistent identifiers. Importantly, the ODC-TBI implements data sharing of individual subject data, enabling pooling for high-sample-size, feature-rich data sets for machine learning analytics. We demonstrate pooled ODC-TBI data analyses, starting with descriptive analytics of subject-level data from 11 previously published articles (N = 1250 subjects) representing six distinct pre-clinical TBI models. Second, we perform unsupervised machine learning on multi-cohort data to identify persistent inflammatory patterns across different studies, improving experimental sensitivity for pro- versus anti-inflammation effects. As funders and journals increasingly mandate open data practices, ODC-TBI will create new scientific opportunities for researchers and facilitate multi-data-set, multi-dimensional analytics toward effective translation.
Original language | English (US) |
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Pages (from-to) | 139-157 |
Number of pages | 19 |
Journal | Neurotrauma Reports |
Volume | 3 |
Issue number | 1 |
DOIs | |
State | Published - Apr 1 2022 |
Keywords
- data sharing
- FAIR principles
- multi-variate analysis
- Open Data Commons
- principal component analysis
- traumatic brain Injury
ASJC Scopus subject areas
- Developmental Neuroscience
- Cellular and Molecular Neuroscience