Env gp120 sequence analysis of HIV type 1 strains from diverse areas of the brain shows preponderance of CCR5 usage

Meet Shah, Theresa K. Smit, Susan Morgello, Wallace Tourtellotte, Benjamin Gelman, Bruce J. Brew, Nitin K. Saksena

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

In this study diverse areas of the autopsied brain of 12 HIV-infected patients with and without dementia were analyzed. All brain samples were obtained at autopsy through prior consent. Env C2-V5 region was PCR amplified and sequenced and compared between different brain regions within the same patient and also between patients to find changes, which can discriminate between patients with and without dementia and also identify motifs responsible for coreceptor-mediated entry of HIV into the CNS. For this, the Env gp120 hypervariable V3 region (35 amino acid residues) was subjected to position scoring matrix analyses (PSSM) for predicting coreceptor usage in the brain. These predictions based on the V3 loop sequence were absolutely consistent with the biologically determined viral phenotype at least for the samples, which were successful for virus culture. These data clearly show that the PSSM correlates can be unambiguously applied in determining viral phenotype for entry. The most notable observation is that of 69 V3 region sequences analyzed from 12 patients from diverse brain regions, 64 showed CCR5 usage (93%) as opposed to only five using CXCR4. Comparison of the V3 loop charge failed to show any correlation between charge and coreceptor usage. Given that cells of macrophage lineage predominate in the CNS and also facilitate HIV entry into the CNS, the preponderance of CCR5 usage in brain-derived HIV strains from patients with and without dementia may have important clinical implications.

Original languageEnglish (US)
Pages (from-to)177-181
Number of pages5
JournalAIDS Research and Human Retroviruses
Volume22
Issue number2
DOIs
StatePublished - Feb 2006

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Sequence Analysis
HIV-1
Brain
HIV
Dementia
Phenotype
Cell Lineage
Autopsy
Macrophages
Observation
Viruses
Amino Acids
Polymerase Chain Reaction

ASJC Scopus subject areas

  • Immunology
  • Virology

Cite this

Env gp120 sequence analysis of HIV type 1 strains from diverse areas of the brain shows preponderance of CCR5 usage. / Shah, Meet; Smit, Theresa K.; Morgello, Susan; Tourtellotte, Wallace; Gelman, Benjamin; Brew, Bruce J.; Saksena, Nitin K.

In: AIDS Research and Human Retroviruses, Vol. 22, No. 2, 02.2006, p. 177-181.

Research output: Contribution to journalArticle

Shah, Meet ; Smit, Theresa K. ; Morgello, Susan ; Tourtellotte, Wallace ; Gelman, Benjamin ; Brew, Bruce J. ; Saksena, Nitin K. / Env gp120 sequence analysis of HIV type 1 strains from diverse areas of the brain shows preponderance of CCR5 usage. In: AIDS Research and Human Retroviruses. 2006 ; Vol. 22, No. 2. pp. 177-181.
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