Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family

Ting Gao, Hui Yao, Jingyuan Song, Yingjie Zhu, Chang Liu, Shilin Chen

Research output: Contribution to journalArticle

107 Citations (Scopus)

Abstract

Background. Five DNA regions, namely, rbcL, matK, ITS, ITS2, and psbA-trnH, have been recommended as primary DNA barcodes for plants. Studies evaluating these regions for species identification in the large plant taxon, which includes a large number of closely related species, have rarely been reported. Results. The feasibility of using the five proposed DNA regions was tested for discriminating plant species within Asteraceae, the largest family of flowering plants. Among these markers, ITS2 was the most useful in terms of universality, sequence variation, and identification capability in the Asteraceae family. The species discriminating power of ITS2 was also explored in a large pool of 3,490 Asteraceae sequences that represent 2,315 species belonging to 494 different genera. The result shows that ITS2 correctly identified 76.4% and 97.4% of plant samples at the species and genus levels, respectively. In addition, ITS2 displayed a variable ability to discriminate related species within different genera. Conclusions. ITS2 is the best DNA barcode for the Asteraceae family. This approach significantly broadens the application of DNA barcoding to resolve classification problems in the family Asteraceae at the genera and species levels.

Original languageEnglish (US)
Article number324
JournalBMC Evolutionary Biology
Volume10
Issue number1
DOIs
StatePublished - Oct 28 2010
Externally publishedYes

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DNA barcoding
Asteraceae
DNA
family problems
Angiospermae
family
angiosperm
taxonomy
sampling

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics

Cite this

Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family. / Gao, Ting; Yao, Hui; Song, Jingyuan; Zhu, Yingjie; Liu, Chang; Chen, Shilin.

In: BMC Evolutionary Biology, Vol. 10, No. 1, 324, 28.10.2010.

Research output: Contribution to journalArticle

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AU - Chen, Shilin

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