Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects in Vitro

Imran H. Chowdhury, Hema P. Narra, Abha Sahni, Kamil Khanipov, Casey L.C. Schroeder, Jignesh Patel, Yuriy Fofanov, Sanjeev Sahni

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Endothelial cell interactions with lipopolysaccharide (LPS) involve both activating and repressing signals resulting in pronounced alterations in their transcriptome and proteome. Noncoding RNAs are now appreciated as posttranscriptional and translational regulators of cellular signaling and responses, but their expression status and roles during endothelial interactions with LPS are not well understood. We report on the expression profile of long noncoding (lnc) RNAs of human microvascular endothelial cells in response to LPS. We have identified a total of 10,781 and 8310 lncRNA transcripts displaying either positive or negative regulation of expression, respectively, at 3 and 24 h posttreatment. A majority of LPS-induced lncRNAs are multiexonic and distributed across the genome as evidenced by their presence on all chromosomes. Present among these are a total of 44 lncRNAs with known regulatory functions, of which 41 multiexonic lncRNAs have multiple splice variants. We have further validated splice variant-specific expression of EGO (NONHSAT087634) and HOTAIRM1 (NONHSAT119666) at 3 h and significant upregulation of lnc-IL7R at 24 h. This study illustrates the genome-wide regulation of endothelial lncRNA splice variants in response to LPS and provides a foundation for further investigations of differentially expressed lncRNA transcripts in endothelial responses to LPS and pathophysiology of sepsis/septic shock.

Original languageEnglish (US)
Article number3427461
JournalMediators of Inflammation
Volume2017
DOIs
StatePublished - 2017

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Long Noncoding RNA
Lipopolysaccharides
Endothelial Cells
Genome
Untranslated RNA
Proteome
Septic Shock
In Vitro Techniques
Transcriptome
Cell Communication
Sepsis
Up-Regulation
Chromosomes

ASJC Scopus subject areas

  • Immunology
  • Cell Biology

Cite this

Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells : Lipopolysaccharide Effects in Vitro. / Chowdhury, Imran H.; Narra, Hema P.; Sahni, Abha; Khanipov, Kamil; Schroeder, Casey L.C.; Patel, Jignesh; Fofanov, Yuriy; Sahni, Sanjeev.

In: Mediators of Inflammation, Vol. 2017, 3427461, 2017.

Research output: Contribution to journalArticle

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