Identification of human metapneumovirus-induced gene networks in airway epithelial cells by microarray analysis

Xiaoyong Bao, M. Sinha, T. Liu, C. Hong, B. A. Luxon, Roberto Garofalo, Antonella Casola

Research output: Contribution to journalArticle

32 Citations (Scopus)

Abstract

Human metapneumovirus (hMPV) is a major cause of lower respiratory tract infections in infants, elderly and immunocompromised patients. Little is known about the response to hMPV infection of airway epithelial cells, which play a pivotal role in initiating and shaping innate and adaptive immune responses. In this study, we analyzed the transcriptional profiles of airway epithelial cells infected with hMPV using high-density oligonucleotide microarrays. Of the 47,400 transcripts and variants represented on the Affimetrix GeneChip Human Genome HG-U133 plus 2 array, 1601 genes were significantly altered following hMPV infection. Altered genes were then assigned to functional categories and mapped to signaling pathways. Many up-regulated genes are involved in the initiation of pro-inflammatory and antiviral immune responses, including chemokines, cytokines, type I interferon and interferon-inducible proteins. Other important functional classes up-regulated by hMPV infection include cellular signaling, gene transcription and apoptosis. Notably, genes associated with antioxidant and membrane transport activity, several metabolic pathways and cell proliferation were down-regulated in response to hMPV infection. Real-time PCR and Western blot assays were used to confirm the expression of genes related to several of these functional groups. The overall result of this study provides novel information on host gene expression upon infection with hMPV and also serves as a foundation for future investigations of genes and pathways involved in the pathogenesis of this important viral infection. Furthermore, it can facilitate a comparative analysis of other paramyxoviral infections to determine the transcriptional changes that are conserved versus the one that are specific to individual pathogens.

Original languageEnglish (US)
Pages (from-to)114-127
Number of pages14
JournalVirology
Volume374
Issue number1
DOIs
StatePublished - Apr 25 2008

Fingerprint

Tissue Array Analysis
Metapneumovirus
Gene Regulatory Networks
Epithelial Cells
Infection
Genes
Gene Expression
Interferon Type I
Immunocompromised Host
Adaptive Immunity
Human Genome
Virus Diseases
Metabolic Networks and Pathways
Oligonucleotide Array Sequence Analysis
Chemokines
Innate Immunity
Respiratory Tract Infections
Interferons
Antiviral Agents
Real-Time Polymerase Chain Reaction

Keywords

  • Airway epithelial cells
  • Cell signaling
  • Chemokines
  • Gene networks
  • hMPV
  • Inflammation
  • Innate immune response

ASJC Scopus subject areas

  • Virology
  • Infectious Diseases

Cite this

Identification of human metapneumovirus-induced gene networks in airway epithelial cells by microarray analysis. / Bao, Xiaoyong; Sinha, M.; Liu, T.; Hong, C.; Luxon, B. A.; Garofalo, Roberto; Casola, Antonella.

In: Virology, Vol. 374, No. 1, 25.04.2008, p. 114-127.

Research output: Contribution to journalArticle

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