Integrated DNA barcoding database for identifying Chinese animal medicine

Lin Chun Shi, Hui Yao, Li Fang Xie, Yingjie Zhu, Jing Yuan Song, Hui Zhang, Shi Lin Chen

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

In order to construct an integrated DNA barcoding database for identifying Chinese animal medicine, the authors and their cooperators have completed a lot of researches for identifying Chinese animal medicines using DNA barcoding technology. Sequences from GenBank have been analyzed simultaneously. Three different methods, BLAST, barcoding gap and Tree building, have been used to confirm the reliabilities of barcode records in the database. The integrated DNA barcoding database for identifying Chinese animal medicine has been constructed using three different parts: specimen, sequence and literature information. This database contained about 800 animal medicines and the adulterants and closely related species. Unknown specimens can be identified by pasting their sequence record into the window on the ID page of species identification system for traditional Chinese medicine (www.tcmbarcode.cn). The integrated DNA barcoding database for identifying Chinese animal medicine is significantly important for animal species identification, rare and endangered species conservation and sustainable utilization of animal resources.

Original languageEnglish (US)
Pages (from-to)2155-2159
Number of pages5
JournalZhongguo Zhongyao Zazhi
Volume39
Issue number12
DOIs
StatePublished - Jun 15 2014
Externally publishedYes

Fingerprint

Nucleic Acid Databases
Medicine
Databases
Endangered Species
Chinese Traditional Medicine
Technology
DNA
Research

Keywords

  • Animal medicine
  • COI
  • Database
  • Identification

ASJC Scopus subject areas

  • Pharmacology, Toxicology and Pharmaceutics(all)
  • Complementary and alternative medicine
  • Pharmacology (medical)

Cite this

Shi, L. C., Yao, H., Xie, L. F., Zhu, Y., Song, J. Y., Zhang, H., & Chen, S. L. (2014). Integrated DNA barcoding database for identifying Chinese animal medicine. Zhongguo Zhongyao Zazhi, 39(12), 2155-2159. https://doi.org/10.4268/cjcmm20141201

Integrated DNA barcoding database for identifying Chinese animal medicine. / Shi, Lin Chun; Yao, Hui; Xie, Li Fang; Zhu, Yingjie; Song, Jing Yuan; Zhang, Hui; Chen, Shi Lin.

In: Zhongguo Zhongyao Zazhi, Vol. 39, No. 12, 15.06.2014, p. 2155-2159.

Research output: Contribution to journalArticle

Shi, LC, Yao, H, Xie, LF, Zhu, Y, Song, JY, Zhang, H & Chen, SL 2014, 'Integrated DNA barcoding database for identifying Chinese animal medicine', Zhongguo Zhongyao Zazhi, vol. 39, no. 12, pp. 2155-2159. https://doi.org/10.4268/cjcmm20141201
Shi, Lin Chun ; Yao, Hui ; Xie, Li Fang ; Zhu, Yingjie ; Song, Jing Yuan ; Zhang, Hui ; Chen, Shi Lin. / Integrated DNA barcoding database for identifying Chinese animal medicine. In: Zhongguo Zhongyao Zazhi. 2014 ; Vol. 39, No. 12. pp. 2155-2159.
@article{4fb1693e770a4d40b9e217a2299d48cc,
title = "Integrated DNA barcoding database for identifying Chinese animal medicine",
abstract = "In order to construct an integrated DNA barcoding database for identifying Chinese animal medicine, the authors and their cooperators have completed a lot of researches for identifying Chinese animal medicines using DNA barcoding technology. Sequences from GenBank have been analyzed simultaneously. Three different methods, BLAST, barcoding gap and Tree building, have been used to confirm the reliabilities of barcode records in the database. The integrated DNA barcoding database for identifying Chinese animal medicine has been constructed using three different parts: specimen, sequence and literature information. This database contained about 800 animal medicines and the adulterants and closely related species. Unknown specimens can be identified by pasting their sequence record into the window on the ID page of species identification system for traditional Chinese medicine (www.tcmbarcode.cn). The integrated DNA barcoding database for identifying Chinese animal medicine is significantly important for animal species identification, rare and endangered species conservation and sustainable utilization of animal resources.",
keywords = "Animal medicine, COI, Database, Identification",
author = "Shi, {Lin Chun} and Hui Yao and Xie, {Li Fang} and Yingjie Zhu and Song, {Jing Yuan} and Hui Zhang and Chen, {Shi Lin}",
year = "2014",
month = "6",
day = "15",
doi = "10.4268/cjcmm20141201",
language = "English (US)",
volume = "39",
pages = "2155--2159",
journal = "Zhongguo Zhongyao Zazhi",
issn = "1001-5302",
publisher = "Zhongguo Zhongyi Yanjiuyuan",
number = "12",

}

TY - JOUR

T1 - Integrated DNA barcoding database for identifying Chinese animal medicine

AU - Shi, Lin Chun

AU - Yao, Hui

AU - Xie, Li Fang

AU - Zhu, Yingjie

AU - Song, Jing Yuan

AU - Zhang, Hui

AU - Chen, Shi Lin

PY - 2014/6/15

Y1 - 2014/6/15

N2 - In order to construct an integrated DNA barcoding database for identifying Chinese animal medicine, the authors and their cooperators have completed a lot of researches for identifying Chinese animal medicines using DNA barcoding technology. Sequences from GenBank have been analyzed simultaneously. Three different methods, BLAST, barcoding gap and Tree building, have been used to confirm the reliabilities of barcode records in the database. The integrated DNA barcoding database for identifying Chinese animal medicine has been constructed using three different parts: specimen, sequence and literature information. This database contained about 800 animal medicines and the adulterants and closely related species. Unknown specimens can be identified by pasting their sequence record into the window on the ID page of species identification system for traditional Chinese medicine (www.tcmbarcode.cn). The integrated DNA barcoding database for identifying Chinese animal medicine is significantly important for animal species identification, rare and endangered species conservation and sustainable utilization of animal resources.

AB - In order to construct an integrated DNA barcoding database for identifying Chinese animal medicine, the authors and their cooperators have completed a lot of researches for identifying Chinese animal medicines using DNA barcoding technology. Sequences from GenBank have been analyzed simultaneously. Three different methods, BLAST, barcoding gap and Tree building, have been used to confirm the reliabilities of barcode records in the database. The integrated DNA barcoding database for identifying Chinese animal medicine has been constructed using three different parts: specimen, sequence and literature information. This database contained about 800 animal medicines and the adulterants and closely related species. Unknown specimens can be identified by pasting their sequence record into the window on the ID page of species identification system for traditional Chinese medicine (www.tcmbarcode.cn). The integrated DNA barcoding database for identifying Chinese animal medicine is significantly important for animal species identification, rare and endangered species conservation and sustainable utilization of animal resources.

KW - Animal medicine

KW - COI

KW - Database

KW - Identification

UR - http://www.scopus.com/inward/record.url?scp=84905695240&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84905695240&partnerID=8YFLogxK

U2 - 10.4268/cjcmm20141201

DO - 10.4268/cjcmm20141201

M3 - Article

C2 - 25244735

AN - SCOPUS:84905695240

VL - 39

SP - 2155

EP - 2159

JO - Zhongguo Zhongyao Zazhi

JF - Zhongguo Zhongyao Zazhi

SN - 1001-5302

IS - 12

ER -