Negatively Charged Disordered Regions are Prevalent and Functionally Important Across Proteomes

Lavi S. Bigman, Junji Iwahara, Yaakov Levy

Research output: Contribution to journalArticlepeer-review

13 Scopus citations

Abstract

Intrinsically disordered regions (IDRs) of proteins are often characterized by a high fraction of charged residues, but differ in their overall net charge and in the organization of the charged residues. The function-encoding information stored via IDR charge composition and organization remains elusive. Here, we aim to decipher the sequence–function relationship in IDRs by presenting a comprehensive bioinformatic analysis of the charge properties of IDRs in the human, mouse, and yeast proteomes. About 50% of the proteins comprise at least a single IDR, which is either positively or negatively charged. Highly negatively charged IDRs are longer and possess greater net charge per residue compared with highly positively charged IDRs. A striking difference between positively and negatively charged IDRs is the characteristics of the repeated units, specifically, of consecutive Lys or Arg residues (K/R repeats) and Asp or Glu (D/E repeats) residues. D/E repeats are found to be about five times longer than K/R repeats, with the longest found containing 49 residues. Long stretches of consecutive D and E are found to be more prevalent in nucleic acid-related proteins. They are less common in prokaryotes, and in eukaryotes their abundance increases with genome size. The functional role of D/E repeats and the profound differences between them and K/R repeats are discussed.

Original languageEnglish (US)
Article number167660
JournalJournal of Molecular Biology
Volume434
Issue number14
DOIs
StatePublished - Jul 30 2022
Externally publishedYes

Keywords

  • D/E repeat
  • disordered regions
  • electrostatics
  • polyampholytes
  • repeat sequences

ASJC Scopus subject areas

  • Biophysics
  • Structural Biology
  • Molecular Biology

Fingerprint

Dive into the research topics of 'Negatively Charged Disordered Regions are Prevalent and Functionally Important Across Proteomes'. Together they form a unique fingerprint.

Cite this