Nonpolar Solvation Free Energy from Proximal Distribution Functions

Shu Ching Ou, Justin A. Drake, Bernard Pettitt

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

Using precomputed near neighbor or proximal distribution functions (pDFs) that approximate solvent density about atoms in a chemically bonded context one can estimate the solvation structures around complex solutes and the corresponding solute-solvent energetics. In this contribution, we extend this technique to calculate the solvation free energies (ΔG) of a variety of solutes. In particular we use pDFs computed for small peptide molecules to estimate ΔG for larger peptide systems. We separately compute the non polar (ΔGvdW) and electrostatic (ΔGelec) components of the underlying potential model. Here we show how the former can be estimated by thermodynamic integration using pDF-reconstructed solute-solvent interaction energy. The electrostatic component can be approximated with Linear Response theory as half of the electrostatic solute-solvent interaction energy. We test the method by calculating the solvation free energies of butane, propanol, polyalanine, and polyglycine and by comparing with traditional free energy simulations. Results indicate that the pDF-reconstruction algorithm approximately reproduces ΔGvdW calculated by benchmark free energy simulations to within ∼ kcal/mol accuracy. The use of transferable pDFs for each solute atom allows for a rapid estimation of ΔG for arbitrary molecular systems.

Original languageEnglish (US)
Pages (from-to)3555-3564
Number of pages10
JournalJournal of Physical Chemistry B
Volume121
Issue number15
DOIs
StatePublished - Apr 20 2017

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Solvation
Free energy
Distribution functions
solvation
solutes
Static Electricity
distribution functions
free energy
Electrostatics
Peptides
electrostatics
Benchmarking
1-Propanol
Atoms
peptides
Butane
Propanol
Thermodynamics
estimates
butanes

ASJC Scopus subject areas

  • Surfaces, Coatings and Films
  • Physical and Theoretical Chemistry
  • Materials Chemistry

Cite this

Nonpolar Solvation Free Energy from Proximal Distribution Functions. / Ou, Shu Ching; Drake, Justin A.; Pettitt, Bernard.

In: Journal of Physical Chemistry B, Vol. 121, No. 15, 20.04.2017, p. 3555-3564.

Research output: Contribution to journalArticle

Ou, Shu Ching ; Drake, Justin A. ; Pettitt, Bernard. / Nonpolar Solvation Free Energy from Proximal Distribution Functions. In: Journal of Physical Chemistry B. 2017 ; Vol. 121, No. 15. pp. 3555-3564.
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