Protein collapse driven against solvation free energy without H-bonds

Deepti Karandur, Robert C. Harris, B. Montgomery Pettitt

Research output: Contribution to journalArticle

11 Scopus citations

Abstract

Proteins collapse and fold because intramolecular interactions and solvent entropy, which favor collapse, outweigh solute-solvent interactions that favor expansion. Since the protein backbone actively participates in protein folding and some intrinsically disordered proteins are glycine rich, oligoglycines are good models to study the protein backbone as it collapses, both during conformational changes in disordered proteins and during folding. The solvation free energies of short glycine oligomers become increasingly favorable as chain length increases. In contrast, the solubility limits of glycine oligomers decrease with increasing chain length, indicating that peptide-peptide, and potentially solvent-solvent interactions, overcome peptide-solvent interactions to favor aggregation at finite concentrations of glycine oligomers. We have recently shown that hydrogen- (H-) bonds do not contribute significantly to the concentration-based aggregation of pentaglycines but that dipole-dipole (CO) interactions between the amide groups on the backbone do. Here we demonstrate for the collapse of oligoglycines ranging in length from 15 to 25 residues similarly that H-bonds do not contribute significantly to collapse but that CO dipole interactions do. These results illustrate that some intrapeptide interactions that determine the solubility limit of short glycine oligomers are similar to those that drive the collapse of longer glycine peptides.

Original languageEnglish (US)
Pages (from-to)103-110
Number of pages8
JournalProtein Science
Volume25
Issue number1
DOIs
StatePublished - Jan 1 2016

Keywords

  • intrinsically disordered proteins
  • molecular dynamics
  • oligoglycine
  • simulation

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology

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