Rapid identification of ubiquitination and SUMOylation target sites by microfluidic peptide array

Bing Zhu, Tierra R. Farris, Sarah L. Milligan, Haosi Chen, Ruijuan Zhu, Aailing Hong, Xiaochuan Zhou, Xiaolian Gao, Jere McBride

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

SUMOylation and ubiquitination are two essential post translational modifications (PTMs) involved in the regulation of important biological processes in eukaryotic cells. Identification of ubiquitin (Ub) and small ubiquitin-related modifier (SUMO)-conjugated lysine residues in proteins is critical for understanding the role of ubiquitination and SUMOylation, but remains experimentally challenging. We have developed a powerful in vitro Ub/SUMO assay using a novel high density peptide array incorporated within a microfluidic device that allows rapid identification of ubiquitination and SUMOylation sites on target proteins. We performed the assay with a panel of human proteins and a microbial effector with known target sites for Ub or SUMO modifications, and determined that 80% of these proteins were modified by Ub or specific SUMO isoforms at the sites previously determined using conventional methods. Our results confirm the specificity for both SUMO isoform and individual target proteins at the peptide level. In summary, this microfluidic high density peptide array approach is a rapid screening assay to determine sites of Ub and SUMO modification of target substrates, which will provide new insights into the composition, selectivity and specificity of these PTM target sites.

Original languageEnglish (US)
Pages (from-to)430-438
Number of pages9
JournalBiochemistry and Biophysics Reports
Volume5
DOIs
StatePublished - Mar 1 2016

Fingerprint

Sumoylation
Microfluidics
Ubiquitination
Ubiquitin
Peptides
Assays
Lab-On-A-Chip Devices
Post Translational Protein Processing
Proteins
Protein Isoforms
Biological Phenomena
Eukaryotic Cells
Lysine
Screening

Keywords

  • Effector
  • Ehrlichia
  • High density peptide array
  • SUMO
  • Ubiquitin

ASJC Scopus subject areas

  • Biochemistry
  • Biophysics
  • Cell Biology
  • Molecular Biology

Cite this

Rapid identification of ubiquitination and SUMOylation target sites by microfluidic peptide array. / Zhu, Bing; Farris, Tierra R.; Milligan, Sarah L.; Chen, Haosi; Zhu, Ruijuan; Hong, Aailing; Zhou, Xiaochuan; Gao, Xiaolian; McBride, Jere.

In: Biochemistry and Biophysics Reports, Vol. 5, 01.03.2016, p. 430-438.

Research output: Contribution to journalArticle

Zhu, Bing ; Farris, Tierra R. ; Milligan, Sarah L. ; Chen, Haosi ; Zhu, Ruijuan ; Hong, Aailing ; Zhou, Xiaochuan ; Gao, Xiaolian ; McBride, Jere. / Rapid identification of ubiquitination and SUMOylation target sites by microfluidic peptide array. In: Biochemistry and Biophysics Reports. 2016 ; Vol. 5. pp. 430-438.
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