Regulators of cellular levels of histone acetylation in Saccharomyces cerevisiae

Weimin Peng, Cynthia Togawa, Kangling Zhang, Siavash K. Kurdistani

Research output: Contribution to journalArticle

25 Citations (Scopus)

Abstract

Histone acetylation levels are regulated through the opposing activities of histone acetyltransferases (HATs) and deacetylases (HDACs). While much is known about gene-specific control of histone acetylation, little is understood about how total or cellular levels of histone acetylation are regulated. To identify regulators of cellular levels of histone acetylation, we developed an immunofluorescence-based approach to screen the single-gene deletion library of Saccharomyces cerevisiae for strains with significant reductions in cellular histone acetylation levels. Of the 4848 mutants screened, we identified 63 strains with considerable cellular hypoacetylation of N-terminal lysines in histones H3 and H4. The cellular hypoacetylation was validated for subsets of the identified strains through secondary screens including mass spectrometric analysis of individual lysines and chromatin immunoprecipitation of specific genomic loci. Among the identified mutants were several members of the Ccr4-Not complex, V-type ATPases, and vacuolar protein-sorting complexes as well as genes with unknown functions. We show that Gcn5, a major HAT in yeast, has diminished histone acetyltransferase activity in particular mutants, providing a plausible explanation for reduction of cellular acetylation levels in vivo. Our findings have revealed unexpected and novel links between histone acetylation, Gcn5 HAT activity, and diverse processes such as transcription, cellular ion homeostasis, and protein transport.

Original languageEnglish (US)
Pages (from-to)277-289
Number of pages13
JournalGenetics
Volume179
Issue number1
DOIs
StatePublished - May 2008
Externally publishedYes

Fingerprint

Acetylation
Histones
Saccharomyces cerevisiae
Histone Acetyltransferases
Protein Transport
Lysine
Vacuolar Proton-Translocating ATPases
Histone Deacetylases
Chromatin Immunoprecipitation
Ion Transport
Gene Deletion
Gene Library
Genes
Fluorescent Antibody Technique
Homeostasis
Yeasts

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Cite this

Regulators of cellular levels of histone acetylation in Saccharomyces cerevisiae. / Peng, Weimin; Togawa, Cynthia; Zhang, Kangling; Kurdistani, Siavash K.

In: Genetics, Vol. 179, No. 1, 05.2008, p. 277-289.

Research output: Contribution to journalArticle

Peng, Weimin ; Togawa, Cynthia ; Zhang, Kangling ; Kurdistani, Siavash K. / Regulators of cellular levels of histone acetylation in Saccharomyces cerevisiae. In: Genetics. 2008 ; Vol. 179, No. 1. pp. 277-289.
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