Sequencing of the rat β-catenin gene (Ctnnb1) and mutational analysis of liver tumors induced by 2-amino-3-methylimidazo[4,5-f]quinoline

Qingjie Li, Brian M. Dixon, Mohamed Al-Fageeh, Carmen A. Blum, Roderick H. Dashwood

Research output: Contribution to journalArticle

5 Citations (Scopus)

Abstract

β-Catenin, a protein that functions in cadherin-mediated cell-cell adhesion as well as in signal transduction, has received increasing attention in recent years due to its role as an oncogene in various human cancers. The primary sequence of the human β-catenin gene (CTNNB1) has been known for some time, but that of the rat β-catenin gene (Ctnnb1) has not heretofore been studied in detail. We report here the primary structure of Ctnnb1 using PCR-based methods and direct sequencing. The size of the complete Ctnnb1 gene was determined to be 9082 bp. We found the rat Ctnnb1 gene to contain 14 exons, ranging in size from 61 to 356 bp, and 13 introns ranging in size from 76 to 2524 bp. The transcription start site appears to be 157 bp upstream of the ATG codon located in exon 1. The resulting transcript is 2650 nucleotides long (encoding a protein of 781 amino acids). We found the 5′ UTR to consist of 157 nucleotides and the 3′ UTR to be 147 nucleotides long. The region coding for the glycogen synthase kinase-3β domain of β-catenin is located in exon 2 of rat Ctnnb1, in contrast to human CTNNB1 in which it is found in exon 3. Based on the newly acquired knowledge of the primary sequence, more than a dozen 2-amino-3-methylimidazo[4,5-f]quinoline (IQ)-induced rat liver tumors were screened for the presence or absence of mutations in all 14 exons of rat Ctnnb1. Surprisingly, no mutations were found. The results are discussed in the context of the organ-specificity of IQ-induced mutations in β-catenin, being highly prevalent in colon tumors, but much less common in liver tumors.

Original languageEnglish (US)
Pages (from-to)255-262
Number of pages8
JournalGene
Volume283
Issue number1-2
DOIs
StatePublished - Jan 23 2002
Externally publishedYes

Fingerprint

2-amino-3-methylimidazo(4,5-f)quinoline
Catenins
Exons
Liver
Nucleotides
Genes
Neoplasms
Mutation
Glycogen Synthase Kinase 3
Organ Specificity
5' Untranslated Regions
Transcription Initiation Site
3' Untranslated Regions
Cadherins
Oncogenes
Cell Adhesion
Codon
Introns
Signal Transduction
Colon

Keywords

  • Anchored polymerase chain reaction
  • Exon-intron boundary
  • Genomic sequence
  • Heterocyclic amine
  • Polymerase chain reaction single-strand conformation polymorphism

ASJC Scopus subject areas

  • Genetics

Cite this

Sequencing of the rat β-catenin gene (Ctnnb1) and mutational analysis of liver tumors induced by 2-amino-3-methylimidazo[4,5-f]quinoline. / Li, Qingjie; Dixon, Brian M.; Al-Fageeh, Mohamed; Blum, Carmen A.; Dashwood, Roderick H.

In: Gene, Vol. 283, No. 1-2, 23.01.2002, p. 255-262.

Research output: Contribution to journalArticle

Li, Qingjie ; Dixon, Brian M. ; Al-Fageeh, Mohamed ; Blum, Carmen A. ; Dashwood, Roderick H. / Sequencing of the rat β-catenin gene (Ctnnb1) and mutational analysis of liver tumors induced by 2-amino-3-methylimidazo[4,5-f]quinoline. In: Gene. 2002 ; Vol. 283, No. 1-2. pp. 255-262.
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T1 - Sequencing of the rat β-catenin gene (Ctnnb1) and mutational analysis of liver tumors induced by 2-amino-3-methylimidazo[4,5-f]quinoline

AU - Li, Qingjie

AU - Dixon, Brian M.

AU - Al-Fageeh, Mohamed

AU - Blum, Carmen A.

AU - Dashwood, Roderick H.

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