Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation

Levani Zandarashvili, Da Wei Li, Tianzhi Wang, Rafael Brüschweiler, Junji Iwahara

Research output: Contribution to journalArticle

28 Citations (Scopus)

Abstract

Amino acid side chains involved in hydrogen bonds and electrostatic interactions are crucial for protein function. However, detailed investigations of such side chains in solution are rare. Here, through the combination of long-range 15N-13C scalar J-coupling measurements and an atomic-detail molecular dynamics (MD) simulation, direct insight into the structural dynamic behavior of lysine side chains in human ubiquitin has been gained. On the basis of 1H/13C/15N heteronuclear correlation experiments selective for lysine NH3 + groups, we analyzed two different types of long-range 15N-13C J-coupling constants: one between intraresidue 15Nζ and 13CCγ nuclei (3J NζCCγ) and the other between 15Nζ and carbonyl 13C′ nuclei across a hydrogen bond ( h3JNζC′). The experimental 3J NζCCγ data confirm the highly mobile nature of the Ξ4 torsion angles of lysine side chains seen in the MD simulation. The NH3 + groups of Lys29 and Lys33 exhibit measurable h3JNζC′ couplings arising from hydrogen bonds with backbone carbonyl groups of Glu16 and Thr14, respectively. When interpreted together with the 3JNζCCγ-coupling constants and NMR-relaxation-derived S2 order parameters of the NH 3 + groups, they strongly suggest that hydrogen bonds involving NH3 + groups are of a transient and highly dynamic nature, in remarkably good agreement with the MD simulation results.

Original languageEnglish (US)
Pages (from-to)9192-9195
Number of pages4
JournalJournal of the American Chemical Society
Volume133
Issue number24
DOIs
StatePublished - Jun 22 2011

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Hydrogen Bonding
Lysine
Hydrogen
Hydrogen bonds
Molecular Dynamics Simulation
Molecular dynamics
Computer simulation
Structural dynamics
Ubiquitin
Coulomb interactions
Static Electricity
Torsional stress
Amino acids
Nuclear magnetic resonance
Proteins
Amino Acids
Experiments

ASJC Scopus subject areas

  • Chemistry(all)
  • Catalysis
  • Biochemistry
  • Colloid and Surface Chemistry

Cite this

Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation. / Zandarashvili, Levani; Li, Da Wei; Wang, Tianzhi; Brüschweiler, Rafael; Iwahara, Junji.

In: Journal of the American Chemical Society, Vol. 133, No. 24, 22.06.2011, p. 9192-9195.

Research output: Contribution to journalArticle

Zandarashvili, Levani ; Li, Da Wei ; Wang, Tianzhi ; Brüschweiler, Rafael ; Iwahara, Junji. / Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation. In: Journal of the American Chemical Society. 2011 ; Vol. 133, No. 24. pp. 9192-9195.
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