Stereotactic atlas-guided laser capture microdissection of brain regions affected by traumatic injury

Harris A. Weisz, Deborah R. Boone, Stacy Sell, Helen Hellmich

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

The ability to isolate specific brain regions of interest can be impeded in tissue disassociation techniques that do not preserve their spatial distribution. Such techniques also potentially skew gene expression analysis because the process itself can alter expression patterns in individual cells. Here we describe a laser capture microdissection (LCM) method to selectively collect specific brain regions affected by traumatic brain injury (TBI) by using a modified Nissl (cresyl violet) staining protocol and the guidance of a rat brain atlas. LCM provides access to brain regions in their native positions and the ability to use anatomical landmarks for identification of each specific region. To this end, LCM has been used previously to examine brain region specific gene expression in TBI. This protocol allows examination of TBI-induced alterations in gene and microRNA expression in distinct brain areas within the same animal. The principles of this protocol can be amended and applied to a wide range of studies examining genomic expression in other disease and/or animal models.

Original languageEnglish (US)
Article numbere56134
JournalJournal of Visualized Experiments
Volume2017
Issue number127
DOIs
StatePublished - Sep 11 2017

Fingerprint

Microdissection
Laser Capture Microdissection
Atlases
Brain
Lasers
Wounds and Injuries
Gene Expression
Animal Disease Models
Gene expression
Animals
MicroRNAs
Electronic guidance systems
Staining and Labeling
Spatial distribution
Rats
Genes

Keywords

  • Brain regions
  • Gene expression
  • Issue 127
  • Laser capture microdissection
  • MicroRNA
  • Neuroscience
  • Rat brain atlas
  • Traumatic brain injury

ASJC Scopus subject areas

  • Neuroscience(all)
  • Chemical Engineering(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Immunology and Microbiology(all)

Cite this

Stereotactic atlas-guided laser capture microdissection of brain regions affected by traumatic injury. / Weisz, Harris A.; Boone, Deborah R.; Sell, Stacy; Hellmich, Helen.

In: Journal of Visualized Experiments, Vol. 2017, No. 127, e56134, 11.09.2017.

Research output: Contribution to journalArticle

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