TY - JOUR
T1 - Structure and Function of the Branched Receptor-Binding Complex of Bacteriophage CBA120
AU - Plattner, Michel
AU - Shneider, Mikhail M.
AU - Arbatsky, Nikolay P.
AU - Shashkov, Alexander S.
AU - Chizhov, Alexander O.
AU - Nazarov, Sergey
AU - Prokhorov, Nikolai S.
AU - Taylor, Nicholas M.I.
AU - Buth, Sergey A.
AU - Gambino, Michela
AU - Gencay, Yilmaz Emre
AU - Brøndsted, Lone
AU - Kutter, Elizabeth M.
AU - Knirel, Yuriy A.
AU - Leiman, Petr G.
N1 - Funding Information:
Purification of the O-antigen digestion products, NMR, and HR ESI MS analyses were supported by the Russian Science Foundation (Project No. 14-14-01042 ). The project was supported by the Swiss National Foundation Grant 310030_166383 and UTMB startup grant to P.G.L. We thank Drs. Osnat Herzberg and Daniel Nelson of the Institute for Bioscience and Biotechnology Research (University of Maryland) for sharing their data on substrate diversity of TSP3 that is not described in this report. We thank Flemming Scheutz (Department of Bacteria, Parasites and Fungi, The International Collaborating Centre for Reference and Research on Escherichia and Klebsiella, Statens Serum Institute, Copenhagen, Denmark) and John E. Olsen (Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark) for providing bacterial strains used in the determination of phage host range ( Table 3 ).
Funding Information:
Purification of the O-antigen digestion products, NMR, and HR ESI MS analyses were supported by the Russian Science Foundation (Project No. 14-14-01042). The project was supported by the Swiss National Foundation Grant 310030_166383 and UTMB startup grant to P.G.L. We thank Drs. Osnat Herzberg and Daniel Nelson of the Institute for Bioscience and Biotechnology Research (University of Maryland) for sharing their data on substrate diversity of TSP3 that is not described in this report. We thank Flemming Scheutz (Department of Bacteria, Parasites and Fungi, The International Collaborating Centre for Reference and Research on Escherichia and Klebsiella, Statens Serum Institute, Copenhagen, Denmark) and John E. Olsen (Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark) for providing bacterial strains used in the determination of phage host range (Table 3). Author Contributions: M.P. cloned and purified TSP1, TSP2, TSP3, and TSP4, and crystallized TSP2?N, TSP2?N?O157 complex, TSP3, and TSP4?N. M.P. also purified O-antigen from O157 cells, performed complex formation analysis and electron microscopy imaging, solved and refined all crystal structures, and did all phage-related experiments. S.A.B. helped M.P. with protein purification and structure determination of TSP3. M.M.S. cloned TSP2?N, TSP3, and TSP4?N. S.N. and N.M.I.T. contributed to structural and bioinformatic analysis of the CBA120 particle. N.S.P. advised M.P. on the purification of O157 LPS. N.P.A. A.S.S. A.O.C. and Y.A.K. performed purification, NMR spectroscopy, and mass spectrometry of the O-antigen digestion products. M.P. wrote the first draft of the paper, which was then rewritten by P.G.L. and edited by Y.A.K. M.G. Y.E.G. and L.B. analyzed the host range of CBA120 and S117 using bacterial strains typed by Flemming Scheutz and John E. Olsen. E.K. isolated and extensively characterized CBA120 and determined its unusual very narrow host range on the ECOR collection. All authors read and commented on the manuscript. Conflict of Interest: The authors declare no conflict of interests.
Publisher Copyright:
© 2019 Elsevier Ltd
PY - 2019/9/6
Y1 - 2019/9/6
N2 - Bacteriophages recognize their host cells with the help of tail fiber and tailspike proteins that bind, cleave, or modify certain structures on the cell surface. The spectrum of ligands to which the tail fibers and tailspikes can bind is the primary determinant of the host range. Bacteriophages with multiple tailspike/tail fibers are thought to have a wider host range than their less endowed relatives but the function of these proteins remains poorly understood. Here, we describe the structure, function, and substrate specificity of three tailspike proteins of bacteriophage CBA120—TSP2, TSP3 and TSP4 (orf211 through orf213, respectively). We show that tailspikes TSP2, TSP3 and TSP4 are hydrolases that digest the O157, O77, and O78 Escherichia coli O-antigens, respectively. We demonstrate that recognition of the E. coli O157:H7 host by CBA120 involves binding to and digesting the O157 O-antigen by TSP2. We report the crystal structure of TSP2 in complex with a repeating unit of the O157 O-antigen. We demonstrate that according to the specificity of its tailspikes TSP2, TSP3, and TSP4, CBA120 can infect E. coli O157, O77, and O78, respectively. We also show that CBA120 infects Salmonella enterica serovar Minnesota, and this host range expansion is likely due to the function of TSP1. Finally, we describe the assembly pathway and the architecture of the TSP1–TSP2–TSP3–TSP4 branched complex in CBA120 and its related ViI-like phages.
AB - Bacteriophages recognize their host cells with the help of tail fiber and tailspike proteins that bind, cleave, or modify certain structures on the cell surface. The spectrum of ligands to which the tail fibers and tailspikes can bind is the primary determinant of the host range. Bacteriophages with multiple tailspike/tail fibers are thought to have a wider host range than their less endowed relatives but the function of these proteins remains poorly understood. Here, we describe the structure, function, and substrate specificity of three tailspike proteins of bacteriophage CBA120—TSP2, TSP3 and TSP4 (orf211 through orf213, respectively). We show that tailspikes TSP2, TSP3 and TSP4 are hydrolases that digest the O157, O77, and O78 Escherichia coli O-antigens, respectively. We demonstrate that recognition of the E. coli O157:H7 host by CBA120 involves binding to and digesting the O157 O-antigen by TSP2. We report the crystal structure of TSP2 in complex with a repeating unit of the O157 O-antigen. We demonstrate that according to the specificity of its tailspikes TSP2, TSP3, and TSP4, CBA120 can infect E. coli O157, O77, and O78, respectively. We also show that CBA120 infects Salmonella enterica serovar Minnesota, and this host range expansion is likely due to the function of TSP1. Finally, we describe the assembly pathway and the architecture of the TSP1–TSP2–TSP3–TSP4 branched complex in CBA120 and its related ViI-like phages.
KW - NMR
KW - bacterial surface polysaccharides
KW - bacteriophage attachment
KW - host-cell recognition
KW - x-ray crystallography
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U2 - 10.1016/j.jmb.2019.07.022
DO - 10.1016/j.jmb.2019.07.022
M3 - Article
C2 - 31325442
AN - SCOPUS:85069903638
SN - 0022-2836
VL - 431
SP - 3718
EP - 3739
JO - Journal of Molecular Biology
JF - Journal of Molecular Biology
IS - 19
ER -