Two challenges in genomics that can benefit from petascale platforms

Catherine Putonti, Zhang Meizhuo, Lennart Johnsson, Yuriy Fofanov

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Supercomputing and new sequencing techniques have dramatically increased the number of genomic sequences now publicly available. The rate in which new data is becoming available, however, far exceeds the rate in which one can perform analysis. Examining the wealth of information contained within genomic sequences presents numerous additional computational challenges necessitating high-performance machines. While there are many challenges in genomics that can greatly benefit from the development of more expedient machines, herein we will focus on just two projects which have direct clinical applications.

Original languageEnglish (US)
Title of host publicationLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Pages313-322
Number of pages10
Volume4375 LNCS
StatePublished - 2007
Externally publishedYes
Event12th Euro-Par Conference on Petascale Computational Biology and Bioinformatics Workshop, CoreGRID 2006, UNICORE Summit 2006 - Dresden, Germany
Duration: Aug 29 2006Sep 1 2006

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume4375 LNCS
ISSN (Print)03029743
ISSN (Electronic)16113349

Other

Other12th Euro-Par Conference on Petascale Computational Biology and Bioinformatics Workshop, CoreGRID 2006, UNICORE Summit 2006
CountryGermany
CityDresden
Period8/29/069/1/06

Fingerprint

Genomics
Sequencing
Exceed
High Performance

ASJC Scopus subject areas

  • Computer Science(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Theoretical Computer Science

Cite this

Putonti, C., Meizhuo, Z., Johnsson, L., & Fofanov, Y. (2007). Two challenges in genomics that can benefit from petascale platforms. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 4375 LNCS, pp. 313-322). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4375 LNCS).

Two challenges in genomics that can benefit from petascale platforms. / Putonti, Catherine; Meizhuo, Zhang; Johnsson, Lennart; Fofanov, Yuriy.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 4375 LNCS 2007. p. 313-322 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4375 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Putonti, C, Meizhuo, Z, Johnsson, L & Fofanov, Y 2007, Two challenges in genomics that can benefit from petascale platforms. in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). vol. 4375 LNCS, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 4375 LNCS, pp. 313-322, 12th Euro-Par Conference on Petascale Computational Biology and Bioinformatics Workshop, CoreGRID 2006, UNICORE Summit 2006, Dresden, Germany, 8/29/06.
Putonti C, Meizhuo Z, Johnsson L, Fofanov Y. Two challenges in genomics that can benefit from petascale platforms. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 4375 LNCS. 2007. p. 313-322. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
Putonti, Catherine ; Meizhuo, Zhang ; Johnsson, Lennart ; Fofanov, Yuriy. / Two challenges in genomics that can benefit from petascale platforms. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 4375 LNCS 2007. pp. 313-322 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
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