Two challenges in genomics that can benefit from petascale platforms

Catherine Putonti; Zhang Meizhuo; Lennart Johnsson; Yuriy Fofanov

doi:10.1007/978-3-540-72337-0_31

Two challenges in genomics that can benefit from petascale platforms

Catherine Putonti, Zhang Meizhuo, Lennart Johnsson, Yuriy Fofanov

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Supercomputing and new sequencing techniques have dramatically increased the number of genomic sequences now publicly available. The rate in which new data is becoming available, however, far exceeds the rate in which one can perform analysis. Examining the wealth of information contained within genomic sequences presents numerous additional computational challenges necessitating high-performance machines. While there are many challenges in genomics that can greatly benefit from the development of more expedient machines, herein we will focus on just two projects which have direct clinical applications.

Original language	English (US)
Title of host publication	Euro-Par 2006 Workshops
Subtitle of host publication	Parallel Processing - CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Revised Selected Papers
Publisher	Springer Verlag
Pages	313-322
Number of pages	10
ISBN (Print)	9783540722267
DOIs	https://doi.org/10.1007/978-3-540-72337-0_31
State	Published - 2007
Externally published	Yes
Event	12th Euro-Par Conference on Petascale Computational Biology and Bioinformatics Workshop, CoreGRID 2006, UNICORE Summit 2006 - Dresden, Germany Duration: Aug 29 2006 → Sep 1 2006

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	4375 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Other

Other	12th Euro-Par Conference on Petascale Computational Biology and Bioinformatics Workshop, CoreGRID 2006, UNICORE Summit 2006
Country/Territory	Germany
City	Dresden
Period	8/29/06 → 9/1/06

ASJC Scopus subject areas

Theoretical Computer Science
General Computer Science

Access to Document

10.1007/978-3-540-72337-0_31

Cite this

Putonti, C., Meizhuo, Z., Johnsson, L., & Fofanov, Y. (2007). Two challenges in genomics that can benefit from petascale platforms. In Euro-Par 2006 Workshops: Parallel Processing - CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Revised Selected Papers (pp. 313-322). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4375 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-540-72337-0_31

Two challenges in genomics that can benefit from petascale platforms. / Putonti, Catherine; Meizhuo, Zhang; Johnsson, Lennart et al.
Euro-Par 2006 Workshops: Parallel Processing - CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Revised Selected Papers. Springer Verlag, 2007. p. 313-322 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4375 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Putonti, C, Meizhuo, Z, Johnsson, L & Fofanov, Y 2007, Two challenges in genomics that can benefit from petascale platforms. in Euro-Par 2006 Workshops: Parallel Processing - CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Revised Selected Papers. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 4375 LNCS, Springer Verlag, pp. 313-322, 12th Euro-Par Conference on Petascale Computational Biology and Bioinformatics Workshop, CoreGRID 2006, UNICORE Summit 2006, Dresden, Germany, 8/29/06. https://doi.org/10.1007/978-3-540-72337-0_31

Putonti C, Meizhuo Z, Johnsson L, Fofanov Y. Two challenges in genomics that can benefit from petascale platforms. In Euro-Par 2006 Workshops: Parallel Processing - CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Revised Selected Papers. Springer Verlag. 2007. p. 313-322. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-540-72337-0_31

Putonti, Catherine ; Meizhuo, Zhang ; Johnsson, Lennart et al. / Two challenges in genomics that can benefit from petascale platforms. Euro-Par 2006 Workshops: Parallel Processing - CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Revised Selected Papers. Springer Verlag, 2007. pp. 313-322 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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Two challenges in genomics that can benefit from petascale platforms

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