Whole-genome sequence of Hafnia alvei HUMV-5920, a human isolate

María Lázaro-Díez; Santiago Redondo-Salvo; Aroa Arboleya-Agudo; Javier Gonzalo Ocejo-Vinyals; Itziar Chapartegui-González; Alain A. Ocampo-Sosa; Felix Acosta; Luis Martínez-Martínez; José Ramos-Vivas

doi:10.1128/genomeA.00556-16

Whole-genome sequence of Hafnia alvei HUMV-5920, a human isolate

María Lázaro-Díez, Santiago Redondo-Salvo, Aroa Arboleya-Agudo, Javier Gonzalo Ocejo-Vinyals, Itziar Chapartegui-González, Alain A. Ocampo-Sosa, Felix Acosta, Luis Martínez-Martínez, José Ramos-Vivas

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly.

Original language	English (US)
Article number	e00556-16
Journal	Genome Announcements
Volume	4
Issue number	3
DOIs	https://doi.org/10.1128/genomeA.00556-16
State	Published - 2016
Externally published	Yes

ASJC Scopus subject areas

Molecular Biology
Genetics

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title = "Whole-genome sequence of Hafnia alvei HUMV-5920, a human isolate",

abstract = "A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly.",

author = "Mar{\'i}a L{\'a}zaro-D{\'i}ez and Santiago Redondo-Salvo and Aroa Arboleya-Agudo and Ocejo-Vinyals, {Javier Gonzalo} and Itziar Chapartegui-Gonz{\'a}lez and Ocampo-Sosa, {Alain A.} and Felix Acosta and Luis Mart{\'i}nez-Mart{\'i}nez and Jos{\'e} Ramos-Vivas",

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year = "2016",

doi = "10.1128/genomeA.00556-16",

language = "English (US)",

volume = "4",

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T1 - Whole-genome sequence of Hafnia alvei HUMV-5920, a human isolate

AU - Lázaro-Díez, María

AU - Redondo-Salvo, Santiago

AU - Arboleya-Agudo, Aroa

AU - Ocejo-Vinyals, Javier Gonzalo

AU - Chapartegui-González, Itziar

AU - Ocampo-Sosa, Alain A.

AU - Acosta, Felix

AU - Martínez-Martínez, Luis

AU - Ramos-Vivas, José

PY - 2016

Y1 - 2016

N2 - A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly.

AB - A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly.

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JF - Genome Announcements

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ER -

Whole-genome sequence of Hafnia alvei HUMV-5920, a human isolate

Abstract

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